metaQuantome_datacreation_workflow
Version 1

Visit source Download RO Crate
Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/841?version=1

Steps

ID Name Description
3 mzml to mgf toolshed.g2.bx.psu.edu/repos/galaxyp/msconvert/msconvert/3.0.19052.0
4 Search GUI toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/search_gui/3.3.10.1
5 Peptide Shaker toolshed.g2.bx.psu.edu/repos/galaxyp/peptideshaker/peptide_shaker/1.16.36.3
6 Replace Text toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/1.1.3
7 Remove beginning Remove beginning1
8 Unipept_lca toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.0.0
9 FlashLFQ toolshed.g2.bx.psu.edu/repos/galaxyp/flashlfq/flashlfq/1.0.3.0
10 Unipept_peptinfo toolshed.g2.bx.psu.edu/repos/galaxyp/unipept/unipept/4.5.0
11 Replace Text toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.2
12 Regex Find And Replace toolshed.g2.bx.psu.edu/repos/galaxyp/regex_find_replace/regex1/1.0.0
13 selecting EC column Cut1
14 filter 5% (All_funct) toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0
15 GO_EC toolshed.g2.bx.psu.edu/repos/iuc/query_tabular/query_tabular/3.0.0
16 GO_BP Filter1
17 GO_CC Filter1
18 GO_MF Filter1

Version History

13 (earliest) Created 22nd Apr 2024 at 10:36 by Helena Rasche

Added/updated 3 files


Open master 8ee8380
help Creators and Submitter
Creators
Not specified
Submitter
Tools
msConvert
Unipept
FlashLFQ
License
Creative Commons Attribution 4.0 International
Activity

Views: 26

Created: 22nd Apr 2024 at 10:36

help Tags
help Attributions

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Total size: 49.7 KB
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