ProteoRE ProteomeAnnotation Tutorial (release 2.0) Version 1
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Download RO CrateGalaxy workflow
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Bredberg.txt | Bredberg.txt | n/a |
|
| Lacombe_et_al_2017.txt | Lacombe_et_al_2017.txt | n/a |
|
| Mucilli.txt | Mucilli.txt | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 10 | View proteins on Reactome maps | toolshed.g2.bx.psu.edu/repos/proteore/proteore_reactome/reactome_analysis/2018.12.12 |
| 11 | GO terms classification and enrichment analysis | toolshed.g2.bx.psu.edu/repos/proteore/proteore_clusterprofiler/cluter_profiler/2019.02.18 |
| 3 | Build a lung proteome (as a background ) | toolshed.g2.bx.psu.edu/repos/proteore/proteore_tissue_specific_expression_data/retrieve_from_hpa/2019.02.27 |
| 4 | Filter technical contaminants | toolshed.g2.bx.psu.edu/repos/proteore/proteore_filter_keywords_values/MQoutputfilter/2019.03.11 |
| 5 | ID Converter | toolshed.g2.bx.psu.edu/repos/proteore/proteore_id_converter/IDconverter/2019.03.07 |
| 6 | ID mapping UniProt <-> ENSG ID | toolshed.g2.bx.psu.edu/repos/proteore/proteore_id_converter/IDconverter/2019.03.07 |
| 7 | MS/MS datasets comparison | toolshed.g2.bx.psu.edu/repos/proteore/proteore_venn_diagram/Jvenn/2019.02.21 |
| 8 | Add expression data | toolshed.g2.bx.psu.edu/repos/proteore/proteore_expression_rnaseq_abbased/rna_abbased_data/2019.03.07 |
| 9 | Filter biological contaminants | toolshed.g2.bx.psu.edu/repos/proteore/proteore_filter_keywords_values/MQoutputfilter/2019.03.11 |
Version History
4 (earliest) Created 22nd Apr 2024 at 10:39 by Helena Rasche
Added/updated 3 files
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Created: 22nd Apr 2024 at 10:39
Last updated: 22nd Apr 2024 at 10:39
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