Long non-coding RNAs (lncRNAs) annotation with FEELnc
Version 1

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Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/890?version=1

Inputs

ID Name Description Type
genome_annotation.gff3 #main/genome_annotation.gff3 Original structural annotation
  • File
genome_assembly.fasta #main/genome_assembly.fasta Genome sequence
  • File
mapped_RNASeq.bam #main/mapped_RNASeq.bam RNASeq data mapped on the genome
  • File

Steps

ID Name Description
3 StringTie toolshed.g2.bx.psu.edu/repos/iuc/stringtie/stringtie/1.3.6
4 gffread toolshed.g2.bx.psu.edu/repos/devteam/gffread/gffread/2.2.1.3+galaxy0
5 FEELnc toolshed.g2.bx.psu.edu/repos/iuc/feelnc/feelnc/0.2
6 Concatenate datasets toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.1

Outputs

ID Name Description Type
Classifier output #main/Classifier output n/a
  • File
final_annotation #main/final_annotation n/a
  • File
lncRNAs #main/lncRNAs n/a
  • File
mRNAs #main/mRNAs n/a
  • File

Version History

1 (earliest) Created 22nd Apr 2024 at 10:50 by Helena Rasche

Added/updated 3 files


Open master 47dba0e
help Creators and Submitter
Creator
  • Stéphanie Robin
Submitter
Tools
StringTie
gffread
FEELnc
License
GNU General Public License v3.0 or later
Activity

Views: 26

Created: 22nd Apr 2024 at 10:50

Last updated: 22nd Apr 2024 at 10:50

help Attributions

None

Total size: 19.2 KB
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