mrsa AMR gene detection
Version 1

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Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/894?version=1

Inputs

ID Name Description Type
contigs contigs n/a
  • File
forward_reads forward_reads n/a
  • File
reverse_reads reverse_reads n/a
  • File

Steps

ID Name Description
3 staramr toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.10.0+galaxy1
4 Bakta toolshed.g2.bx.psu.edu/repos/iuc/bakta/bakta/1.8.2+galaxy0
5 Bowtie2 toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.5.0+galaxy0
6 Select Grep1
7 Table to GFF3 toolshed.g2.bx.psu.edu/repos/iuc/tbl2gff3/tbl2gff3/1.2
8 JBrowse toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.11+galaxy1

Outputs

ID Name Description Type
stararm_detailed_summary stararm_detailed_summary n/a
  • File
bakta_annotation_summary bakta_annotation_summary n/a
  • File
bowtie_mapping_stats bowtie_mapping_stats n/a
  • File
jbrowse_output jbrowse_output n/a
  • File

Version History

4 (earliest) Created 22nd Apr 2024 at 11:01 by Helena Rasche

Added/updated 3 files


Open master 2851d52
help Creators and Submitter
Creators
  • Bazante Sanders
  • Bérénice Batut
Submitter
Tools
staramr
Bakta
Bowtie 2
tbl2gff3
JBrowse
License
MIT License
Activity

Views: 25

Created: 22nd Apr 2024 at 11:01

Last updated: 22nd Apr 2024 at 11:01

help Attributions

None

Total size: 24.8 KB
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