GTN - Sequence Analyses - Mapping (imported from uploaded file)
Version 1

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Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/896?version=1

Inputs

ID Name Description Type
reads_1 #main/reads_1 n/a
  • File
reads_2 #main/reads_2 n/a
  • File

Steps

ID Name Description
2 FastQC toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1
3 FastQC toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1
4 Trim Galore! toolshed.g2.bx.psu.edu/repos/bgruening/trim_galore/trim_galore/0.4.3.1
5 MultiQC toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.9
6 Bowtie2 toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.4.2+galaxy0
7 Stats toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.1
8 Filter toolshed.g2.bx.psu.edu/repos/devteam/bamtools_filter/bamFilter/2.4.1
9 Stats toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.1

Outputs

ID Name Description Type
bam_stats_1 #main/bam_stats_1 n/a
  • File
bam_stats_2 #main/bam_stats_2 n/a
  • File
bowtie2_mapping_stats #main/bowtie2_mapping_stats n/a
  • File

Version History

4 (earliest) Created 22nd Apr 2024 at 11:01 by Helena Rasche

Added/updated 3 files


Open master 871861d
help Creators and Submitter
Creators
Not specified
Submitter
Tools
FastQC
Trim Galore
MultiQC
Bowtie 2
SAMtools
BamTools
License
Creative Commons Attribution 4.0 International
Activity

Views: 26

Created: 22nd Apr 2024 at 11:01

Last updated: 22nd Apr 2024 at 11:01

help Attributions

None

Total size: 27.5 KB
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