GTN - Sequence Analyses - Quality Control (imported from uploaded file)
Version 1

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Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/898?version=1

Inputs

ID Name Description Type
reads_1 #main/reads_1 n/a
  • File
reads_2 #main/reads_2 n/a
  • File

Steps

ID Name Description
2 FastQC toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1
3 Cutadapt toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.3
4 FastQC toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1
5 Cutadapt toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.3
6 MultiQC toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.9+galaxy1

Outputs

ID Name Description Type
_anonymous_output_1 #main/_anonymous_output_1 n/a
  • File
_anonymous_output_2 #main/_anonymous_output_2 n/a
  • File
multiqc #main/multiqc n/a
  • File
reads_1_cutadapt #main/reads_1_cutadapt n/a
  • File
reads_1_fastqc #main/reads_1_fastqc n/a
  • File
reads_2_fastqc #main/reads_2_fastqc n/a
  • File
reads_cutadapt #main/reads_cutadapt n/a
  • File

Version History

6 (earliest) Created 22nd Apr 2024 at 11:02 by Helena Rasche

Added/updated 3 files


Open master 99912cb
help Creators and Submitter
Creators
Not specified
Submitter
Tools
FastQC
Cutadapt
MultiQC
License
Creative Commons Attribution 4.0 International
Activity

Views: 27

Created: 22nd Apr 2024 at 11:02

Last updated: 22nd Apr 2024 at 11:02

help Attributions

None

Total size: 21.2 KB
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