MSI Workflow: spatial distribution
Version 1

Visit source Download RO Crate
Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/902?version=1

Inputs

ID Name Description Type
Annotation #main/Annotation n/a
  • File
Uploaded Composite Dataset (imzml) #main/Uploaded Composite Dataset (imzml) n/a
  • File
z features #main/m/z features n/a
  • File

Steps

ID Name Description
3 MSI Qualitycontrol toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_quality_report/cardinal_quality_report/2.6.0.1
4 MSI plot spectra toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_spectra_plots/cardinal_spectra_plots/2.6.0.0
5 MSI filtering toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_filtering/cardinal_filtering/2.6.0.0
6 MSI plot spectra toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_spectra_plots/cardinal_spectra_plots/2.6.0.0
7 MSI data exporter toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_data_exporter/cardinal_data_exporter/2.6.0.0
8 MSI mz images toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/2.6.0.0
9 Filter Filter1
10 MSI mz images toolshed.g2.bx.psu.edu/repos/galaxyp/cardinal_mz_images/cardinal_mz_images/2.6.0.0

Outputs

ID Name Description Type
_anonymous_output_10 #main/_anonymous_output_10 n/a
  • File
_anonymous_output_11 #main/_anonymous_output_11 n/a
  • File
_anonymous_output_12 #main/_anonymous_output_12 n/a
  • File
_anonymous_output_13 #main/_anonymous_output_13 n/a
  • File
_anonymous_output_4 #main/_anonymous_output_4 n/a
  • File
_anonymous_output_5 #main/_anonymous_output_5 n/a
  • File
_anonymous_output_6 #main/_anonymous_output_6 n/a
  • File
_anonymous_output_7 #main/_anonymous_output_7 n/a
  • File
_anonymous_output_8 #main/_anonymous_output_8 n/a
  • File
_anonymous_output_9 #main/_anonymous_output_9 n/a
  • File

Version History

1 (earliest) Created 22nd Apr 2024 at 11:02 by Helena Rasche

Added/updated 3 files


Open master 0aa6e75
help Creators and Submitter
Creators
Not specified
Submitter
Tool
Cardinal
License
Creative Commons Attribution 4.0 International
Activity

Views: 30

Created: 22nd Apr 2024 at 11:02

Last updated: 22nd Apr 2024 at 11:02

help Attributions

None

Total size: 28.8 KB
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