Copy Of GTN Training - Antibiotic Resistance Detection
Version 1

Visit source Download RO Crate
Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/905?version=1

Inputs

ID Name Description Type
Plasmids Plasmids n/a
  • File[]

Steps

ID Name Description
1 NanoPlot toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.25.0+galaxy1
10 NanoPlot toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.25.0+galaxy1
11 Map with minimap2 toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17
12 Racon toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.3.1.1
2 Map with minimap2 toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17
3 Create assemblies with Unicycler toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.7.0
4 miniasm toolshed.g2.bx.psu.edu/repos/iuc/miniasm/miniasm/0.2+galaxy0
5 Bandage Image toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy0
6 PlasFlow toolshed.g2.bx.psu.edu/repos/iuc/plasflow/PlasFlow/1.0
7 staramr toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.5.1
8 Bandage Image toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy0
9 GFA to FASTA toolshed.g2.bx.psu.edu/repos/iuc/gfa_to_fa/gfa_to_fa/0.1.0

Version History

1 (earliest) Created 22nd Apr 2024 at 11:03 by Helena Rasche

Added/updated 3 files


Open master 35cbb5c
help Creators and Submitter
Creators
Not specified
Submitter
Tools
NanoPlot
Minimap2
Racon
Unicycler
miniasm
Bandage
PlasFlow
staramr
License
Creative Commons Attribution 4.0 International
Activity

Views: 29

Created: 22nd Apr 2024 at 11:03

Last updated: 22nd Apr 2024 at 11:03

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Total size: 29.3 KB
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