Amplicon Tutorial
Version 1

Visit source Download RO Crate
Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/916?version=1

Inputs

ID Name Description Type
Anguil Soil Sample Anguil Soil Sample n/a
  • File
Pampa Soil Sample Pampa Soil Sample n/a
  • File
SILVA Reference SILVA Reference n/a
  • File
Trainset PDS alignment Trainset PDS alignment n/a
  • File
Trainset PDS taxonomy Trainset PDS taxonomy n/a
  • File

Steps

ID Name Description
5 Merge.files toolshed.g2.bx.psu.edu/repos/iuc/mothur_merge_files/mothur_merge_files/1.36.1.0
6 Make.group toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_group/mothur_make_group/1.36.1.0
7 Unique.seqs toolshed.g2.bx.psu.edu/repos/iuc/mothur_unique_seqs/mothur_unique_seqs/1.36.1.0
8 Count.seqs toolshed.g2.bx.psu.edu/repos/iuc/mothur_count_seqs/mothur_count_seqs/1.36.1.0
9 Summary.seqs toolshed.g2.bx.psu.edu/repos/iuc/mothur_summary_seqs/mothur_summary_seqs/1.36.1.0
10 Screen.seqs toolshed.g2.bx.psu.edu/repos/iuc/mothur_screen_seqs/mothur_screen_seqs/1.36.1.0
11 Align.seqs toolshed.g2.bx.psu.edu/repos/iuc/mothur_align_seqs/mothur_align_seqs/1.36.1.0
12 Summary.seqs toolshed.g2.bx.psu.edu/repos/iuc/mothur_summary_seqs/mothur_summary_seqs/1.36.1.0
13 Screen.seqs toolshed.g2.bx.psu.edu/repos/iuc/mothur_screen_seqs/mothur_screen_seqs/1.36.1.0
14 Filter.seqs toolshed.g2.bx.psu.edu/repos/iuc/mothur_filter_seqs/mothur_filter_seqs/1.36.1.0
15 Pre.cluster toolshed.g2.bx.psu.edu/repos/iuc/mothur_pre_cluster/mothur_pre_cluster/1.36.1.0
16 Classify.seqs toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_seqs/mothur_classify_seqs/1.36.1.0
17 Cluster.split toolshed.g2.bx.psu.edu/repos/iuc/mothur_cluster_split/mothur_cluster_split/1.36.1.0
18 Make.shared toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_shared/mothur_make_shared/1.36.1.0
19 Classify.otu toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_otu/mothur_classify_otu/1.36.1.0
20 Make.biom toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_biom/mothur_make_biom/1.36.1.0
21 Visualize with Krona toolshed.g2.bx.psu.edu/repos/saskia-hiltemann/krona_text/krona-text/1

Outputs

ID Name Description Type
mothur_make_shared_shared mothur_make_shared_shared n/a
  • File

Version History

1 (earliest) Created 22nd Apr 2024 at 11:05 by Helena Rasche

Added/updated 3 files


Open master f8b4a1f
help Creators and Submitter
Creators
Not specified
Submitter
Tools
mothur
Krona
License
Creative Commons Attribution 4.0 International
Activity

Views: 34

Created: 22nd Apr 2024 at 11:05

Last updated: 22nd Apr 2024 at 11:05

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