MakeAFakeInput
Version 1

Visit source Download RO Crate
Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/933?version=1

Inputs

ID Name Description Type
SRR891268_R1_20M.fastq.gz SRR891268_R1_20M.fastq.gz n/a
  • File
SRR891268_R2_20M.fastq.gz SRR891268_R2_20M.fastq.gz n/a
  • File

Steps

ID Name Description
10 Unique toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sorted_uniq/1.1.0
11 Text transformation toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1
12 Concatenate datasets toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cat/0.1.0
13 Unique toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sorted_uniq/1.1.0
14 seqtk_subseq toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_subseq/1.3.1
15 Text transformation toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sed_tool/1.1.1
16 seqtk_subseq toolshed.g2.bx.psu.edu/repos/iuc/seqtk/seqtk_subseq/1.3.1
2 FASTQ to Tabular toolshed.g2.bx.psu.edu/repos/devteam/fastq_to_tabular/fastq_to_tabular/1.1.1
3 Cutadapt toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.5
4 Cut toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/1.1.0
5 Bowtie2 toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.3.4.3
6 Select random lines random_lines1
7 BAM-to-SAM toolshed.g2.bx.psu.edu/repos/devteam/bam_to_sam/bam_to_sam/2.0.1
8 Filter Filter1
9 Cut Cut1

Version History

4 (earliest) Created 22nd Apr 2024 at 11:07 by Helena Rasche

Added/updated 3 files


Open master fa6b2d8
help Creators and Submitter
Creators
Not specified
Submitter
Tools
seqtk
Cutadapt
Bowtie 2
License
Creative Commons Attribution 4.0 International
Activity

Views: 40

Created: 22nd Apr 2024 at 11:07

Last updated: 22nd Apr 2024 at 11:07

help Attributions

None

Total size: 27.6 KB
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