Circos for E. Coli
Version 1

Visit source Download RO Crate
Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/936?version=1

Inputs

ID Name Description Type
DNA Sequencing Coverage DNA Sequencing Coverage n/a
  • File
Genes Genes n/a
  • File
Genome Genome n/a
  • File
RNA Seq Coverage (1) RNA Seq Coverage (1) n/a
  • File
RNA Seq Coverage (2) RNA Seq Coverage (2) n/a
  • File
Variants Variants n/a
  • File

Steps

ID Name Description
10 Circos: bigWig to Scatter toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_wiggle_to_scatter/0.69.8+galaxy9
11 Circos: bigWig to Scatter toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_wiggle_to_scatter/0.69.8+galaxy9
12 Cut Cut1
13 Circos: bigWig to Scatter toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_wiggle_to_scatter/0.69.8+galaxy9
14 Circos: Interval to Tiles toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_tile/0.69.8+galaxy9
15 Circos toolshed.g2.bx.psu.edu/repos/iuc/circos/circos/0.69.8+galaxy9
6 GC Skew toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_gc_skew/0.69.8+galaxy9
7 Circos: Interval to Circos Text Labels toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_interval_to_text/0.69.8+galaxy9
8 GFF-to-BED gff2bed1
9 Circos: bigWig to Scatter toolshed.g2.bx.psu.edu/repos/iuc/circos/circos_wiggle_to_scatter/0.69.8+galaxy9

Outputs

ID Name Description Type
plot plot n/a
  • File

Version History

1 (earliest) Created 22nd Apr 2024 at 11:07 by Helena Rasche

Added/updated 3 files


Open master bc61e16
help Creators and Submitter
Creator
  • Helena Rasche
Submitter
Tools
Circos
Galactic Circos
License
GNU Affero General Public License v3.0 or later
Activity

Views: 41

Created: 22nd Apr 2024 at 11:07

Last updated: 22nd Apr 2024 at 11:07

help Attributions

None

Total size: 32.9 KB
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