papaa@0.1.9_PI3K_OG_model_tutorial
Version 1

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Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/986?version=1

Inputs

ID Name Description Type
CCLE_DepMap_18Q1_maf_20180207.txt CCLE_DepMap_18Q1_maf_20180207.txt n/a
  • File
CCLE_MUT_CNA_AMP_DEL_binary_Revealer.tsv CCLE_MUT_CNA_AMP_DEL_binary_Revealer.tsv n/a
  • File
GDSC_CCLE_common_mut_cnv_binary.tsv.gz GDSC_CCLE_common_mut_cnv_binary.tsv.gz n/a
  • File
GDSC_EXP_CCLE_converted_name.tsv.gz GDSC_EXP_CCLE_converted_name.tsv.gz n/a
  • File
GSE69822_pi3k_sign.txt GSE69822_pi3k_sign.txt n/a
  • File
GSE69822_pi3k_trans.csv GSE69822_pi3k_trans.csv n/a
  • File
ccle_rnaseq_genes_rpkm_20180929_mod.tsv.gz ccle_rnaseq_genes_rpkm_20180929_mod.tsv.gz n/a
  • File
compounds_of_interest.txt compounds_of_interest.txt n/a
  • File
copy_number_gain_status.tsv copy_number_gain_status.tsv n/a
  • File
copy_number_loss_status.tsv copy_number_loss_status.tsv n/a
  • File
cosmic_cancer_classification.tsv cosmic_cancer_classification.tsv n/a
  • File
gdsc1_ccle_pharm_fitted_dose_data.txt gdsc1_ccle_pharm_fitted_dose_data.txt n/a
  • File
gdsc2_ccle_pharm_fitted_dose_data.txt gdsc2_ccle_pharm_fitted_dose_data.txt n/a
  • File
mc3.v0.2.8.PUBLIC.maf mc3.v0.2.8.PUBLIC.maf n/a
  • File
mutation_burden_freeze.tsv mutation_burden_freeze.tsv n/a
  • File
pancan_mutation_freeze.tsv pancan_mutation_freeze.tsv n/a
  • File
pancan_rnaseq_freeze.tsv pancan_rnaseq_freeze.tsv n/a
  • File
path_rtk_ras_pi3k_genes.txt path_rtk_ras_pi3k_genes.txt n/a
  • File
sample_freeze.tsv sample_freeze.tsv n/a
  • File

Steps

ID Name Description
19 PAPAA: PanCancer classifier toolshed.g2.bx.psu.edu/repos/vijay/pancancer_classifier/pancancer_classifier/0.1.9
20 PAPAA: PanCancer within disease analysis toolshed.g2.bx.psu.edu/repos/vijay/pancancer_within_disease_analysis/pancancer_within_disease_analysis/0.1.9
21 PAPAA: PanCancer apply weights toolshed.g2.bx.psu.edu/repos/vijay/pancancer_apply_weights/pancancer_apply_weights/0.1.9
22 PAPAA: PanCancer external sample status prediction toolshed.g2.bx.psu.edu/repos/vijay/pancancer_external_sample_status_prediction/pancancer_external_sample_status_prediction/0.1.9
23 PAPAA: PanCancer compare within models toolshed.g2.bx.psu.edu/repos/vijay/pancancer_compare_within_models/pancancer_compare_within_models/0.1.9
24 PAPAA: PanCancer visualize decisions toolshed.g2.bx.psu.edu/repos/vijay/pancancer_visualize_decisions/pancancer_visualize_decisions/0.1.9
25 PAPAA: PanCancer alternative genes pathwaymapper toolshed.g2.bx.psu.edu/repos/vijay/pancancer_alternative_genes_pathwaymapper/pancancer_alternative_genes_pathwaymapper/0.1.9
26 PAPAA: PanCancer map mutation class toolshed.g2.bx.psu.edu/repos/vijay/pancancer_map_mutation_class/pancancer_map_mutation_class/0.1.9
27 PAPAA: PanCancer pathway count heatmaps toolshed.g2.bx.psu.edu/repos/vijay/pancancer_pathway_count_heatmaps/pancancer_pathway_count_heatmaps/0.1.9
28 PAPAA: PanCancer targene summary figures toolshed.g2.bx.psu.edu/repos/vijay/pancancer_targene_summary_figures/pancancer_targene_summary_figures/0.1.9
29 PAPAA: PanCancer targene cell line predictions toolshed.g2.bx.psu.edu/repos/vijay/pancancer_targene_cell_line_predictions/pancancer_targene_cell_line_predictions/0.1.9
30 PAPAA: PanCancer targene pharmacology toolshed.g2.bx.psu.edu/repos/vijay/pancancer_targene_pharmacology/pancancer_targene_pharmacology/0.1.9

Version History

5 (earliest) Created 22nd Apr 2024 at 11:14 by Helena Rasche

Added/updated 3 files


Open master 8520a1b
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Views: 29

Created: 22nd Apr 2024 at 11:13

Last updated: 22nd Apr 2024 at 11:14

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