Assembly with Flye
Version 1

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Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/989?version=1

Inputs

ID Name Description Type
long reads long reads n/a
  • File

Steps

ID Name Description
1 Flye: assembly toolshed.g2.bx.psu.edu/repos/bgruening/flye/flye/2.8.2+galaxy0
2 Fasta statistics toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/1.0.3
3 Bandage image: Flye assembly toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy3
4 Quast genome report toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.0.2+galaxy1
5 Bar chart: show contig sizes barchart_gnuplot

Outputs

ID Name Description Type
Flye assembly on input dataset(s) (consensus) Flye assembly on input dataset(s) (consensus) n/a
  • File
Flye assembly on input dataset(s) (assembly_graph) Flye assembly on input dataset(s) (assembly_graph) n/a
  • File
Flye assembly on input dataset(s) (Graphical Fragment Assembly) Flye assembly on input dataset(s) (Graphical Fragment Assembly) n/a
  • File
Flye assembly on input dataset(s) (assembly_info) Flye assembly on input dataset(s) (assembly_info) n/a
  • File
Flye assembly on input dataset(s) (log) Flye assembly on input dataset(s) (log) n/a
  • File
_anonymous_output_1 _anonymous_output_1 n/a
  • File
Bandage Image on input dataset(s): Assembly Graph Image Bandage Image on input dataset(s): Assembly Graph Image n/a
  • File
Quast on input dataset(s): Log Quast on input dataset(s): Log n/a
  • File
Quast on input dataset(s): PDF report Quast on input dataset(s): PDF report n/a
  • File
Quast on input dataset(s): tabular report Quast on input dataset(s): tabular report n/a
  • File
Quast on input dataset(s): HTML report Quast on input dataset(s): HTML report n/a
  • File
Bar chart showing contig sizes Bar chart showing contig sizes n/a
  • File

Version History

2 (earliest) Created 22nd Apr 2024 at 11:14 by Helena Rasche

Added/updated 3 files


Open master 885414d
help Creators and Submitter
Creator
  • Anna Syme
Submitter
Tools
Flye
Bandage
QUAST
License
Creative Commons Attribution 4.0 International
Activity

Views: 19

Created: 22nd Apr 2024 at 11:14

Last updated: 22nd Apr 2024 at 11:14

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Total size: 19.2 KB
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