Data QC
Version 1

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Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/991?version=1

Inputs

ID Name Description Type
Input file: Illumina reads R1 Input file: Illumina reads R1 n/a
  • File
Input file: Illumina reads R2 Input file: Illumina reads R2 n/a
  • File
Input file: long reads Input file: long reads n/a
  • File

Steps

ID Name Description
3 Nanoplot: long reads toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.28.2+galaxy1
4 FastQC on R1 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1
5 FastQC on R2 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1
6 MultiQC: combine fastQC reports toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.9+galaxy1

Outputs

ID Name Description Type
NanoPlot on input dataset(s): HTML report NanoPlot on input dataset(s): HTML report n/a
  • File
MultiQC on input dataset(s): Webpage MultiQC on input dataset(s): Webpage n/a
  • File

Version History

2 (earliest) Created 22nd Apr 2024 at 11:15 by Helena Rasche

Added/updated 3 files


Open master c5c95b9
help Creators and Submitter
Creator
  • Anna Syme
Submitter
Tools
NanoPlot
FastQC
MultiQC
License
Creative Commons Attribution 4.0 International
Activity

Views: 21

Created: 22nd Apr 2024 at 11:15

Last updated: 22nd Apr 2024 at 11:15

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Total size: 19.5 KB
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