kmer counting - meryl
Version 1

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Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/992?version=1

Inputs

ID Name Description Type
Illumina reads R1 #main/Illumina reads R1 n/a
  • File

Steps

ID Name Description
1 Meryl - count kmers toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy4
2 Meryl - generate histogram toolshed.g2.bx.psu.edu/repos/iuc/meryl/meryl/1.3+galaxy4
3 Genomescope toolshed.g2.bx.psu.edu/repos/iuc/genomescope/genomescope/2.0+galaxy1

Outputs

ID Name Description Type
GenomeScope on input dataset(s) Linear plot #main/GenomeScope on input dataset(s) Linear plot n/a
  • File
GenomeScope on input dataset(s) Log plot #main/GenomeScope on input dataset(s) Log plot n/a
  • File
GenomeScope on input dataset(s) Transformed linear plot #main/GenomeScope on input dataset(s) Transformed linear plot n/a
  • File
GenomeScope on input dataset(s) Transformed log plot #main/GenomeScope on input dataset(s) Transformed log plot n/a
  • File
Meryl on input dataset(s): read-db.meryldb #main/Meryl on input dataset(s): read-db.meryldb n/a
  • File
_anonymous_output_1 #main/_anonymous_output_1 n/a
  • File
_anonymous_output_2 #main/_anonymous_output_2 n/a
  • File
_anonymous_output_3 #main/_anonymous_output_3 n/a
  • File
_anonymous_output_4 #main/_anonymous_output_4 n/a
  • File

Version History

2 (earliest) Created 22nd Apr 2024 at 11:15 by Helena Rasche

Added/updated 3 files


Open master 956cad8
help Creators and Submitter
Creator
  • Anna Syme
Submitter
Tool
GenomeScope 2.0
License
Creative Commons Attribution 4.0 International
Activity

Views: 19

Created: 22nd Apr 2024 at 11:15

Last updated: 22nd Apr 2024 at 11:15

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Total size: 13.9 KB
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