Racon polish with long reads, x4
Version 1

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Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/993?version=1

Inputs

ID Name Description Type
Assembly to be polished Assembly to be polished n/a
  • File
long reads long reads n/a
  • File
minimap setting (for long reads) minimap setting (for long reads) n/a
  • string?

Steps

ID Name Description
3 Minimap2: map long reads to assembly Map raw reads to assembly; output paf toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.20+galaxy2
4 Racon: polish 1 toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.4.13
5 Minimap2: map long reads to polished assembly 1 Map raw reads to assembly; output paf toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.20+galaxy2
6 Racon: polish 2 toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.4.13
7 Minimap2: map long reads to polished assembly 2 Map raw reads to assembly; output paf toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.20+galaxy2
8 Racon: polish 3 toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.4.13
9 Minimap2: map long reads to polished assembly 3 Map raw reads to assembly; output paf toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.20+galaxy2
10 Racon: polish 4 toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.4.13

Outputs

ID Name Description Type
Assembly polished by long reads using Racon Assembly polished by long reads using Racon n/a
  • File

Version History

2 (earliest) Created 22nd Apr 2024 at 11:16 by Helena Rasche

Added/updated 3 files


Open master 5358b82
help Creators and Submitter
Creator
  • Anna Syme
Submitter
Tools
Minimap2
Racon
License
Creative Commons Attribution 4.0 International
Activity

Views: 20

Created: 22nd Apr 2024 at 11:15

Last updated: 22nd Apr 2024 at 11:16

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Total size: 31.1 KB
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