Trim and filter reads - fastp
Version 1

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Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/995?version=1

Inputs

ID Name Description Type
Illumina reads R1 #main/Illumina reads R1 n/a
  • File
Illumina reads R2 #main/Illumina reads R2 n/a
  • File
long reads #main/long reads n/a
  • File

Steps

ID Name Description
3 fastp on short reads toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.19.5+galaxy1
4 fastp on long reads toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.19.5+galaxy1

Outputs

ID Name Description Type
fastp filtered R1 reads #main/fastp filtered R1 reads n/a
  • File
fastp filtered R2 reads #main/fastp filtered R2 reads n/a
  • File
fastp filtered long reads #main/fastp filtered long reads n/a
  • File
fastp report on long reads html #main/fastp report on long reads html n/a
  • File
fastp report on long reads json #main/fastp report on long reads json n/a
  • File
fastp report on short reads html #main/fastp report on short reads html n/a
  • File
fastp report on short reads json #main/fastp report on short reads json n/a
  • File

Version History

2 (earliest) Created 22nd Apr 2024 at 11:16 by Helena Rasche

Added/updated 3 files


Open master 0143a70
help Creators and Submitter
Creator
  • Anna Syme
Submitter
Tool
fastp
License
Creative Commons Attribution 4.0 International
Activity

Views: 22

Created: 22nd Apr 2024 at 11:16

Last updated: 22nd Apr 2024 at 11:16

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Total size: 19 KB
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