Racon polish with Illumina reads (R1 only), x2
Version 1

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Workflow Type: Galaxy

Galaxy workflow

SEEK ID: https://dev.workflowhub.eu/workflows/997?version=1

Inputs

ID Name Description Type
Assembly to be polished #main/Assembly to be polished n/a
  • File
Illumina reads, R1, in fastq.gz format #main/Illumina reads, R1, in fastq.gz format n/a
  • File

Steps

ID Name Description
2 Minimap2 round 1: map reads to assembly toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.20+galaxy2
3 Racon round 1: polish assembly toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.4.13
4 Minimap2 round 2: map reads to assembly toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.20+galaxy2
5 Racon round 2: polish assembly toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.4.13

Outputs

ID Name Description Type
Assembly polished by short reads using Racon #main/Assembly polished by short reads using Racon n/a
  • File

Version History

2 (earliest) Created 22nd Apr 2024 at 11:16 by Helena Rasche

Added/updated 3 files


Open master 2c7d8e7
help Creators and Submitter
Creator
  • Anna Syme
Submitter
Tools
Minimap2
Racon
License
Creative Commons Attribution 4.0 International
Activity

Views: 45

Created: 22nd Apr 2024 at 11:16

Last updated: 22nd Apr 2024 at 11:16

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Total size: 18.6 KB
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