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nf-core/hlatyping

nf-core

Precision HLA typing from next-generation sequencing data using OptiType.

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Introduction Quick Start

With Docker With Singularity

Documentation Pipeline DAG

Input fastq Input bam

Credits

Introduction

OptiType is a HLA genotyping algorithm based on integer linear programming. Reads of whole exome/genome/transcriptome sequencing data are mapped against a reference of known MHC class I alleles. To produce accurate 4-digit HLA genotyping predictions, all major and minor HLA-I loci are ...

Type: Nextflow

Creators: None

Submitter: Finn Bacall

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Created: 25th Feb 2020 at 11:06

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