Workflows

FastQC45 MultiQC29 SAMtools24 SCANPY22 Cutadapt17 QUAST16 ggplot215 Bowtie 214 BWA14 BEDTools13 BUSCO13 fastp13 scikit-learn13 Bandage12 JBrowse12 Minimap211 mothur11 FreeBayes10 MaxQuant10 msConvert10 BamTools9 DeepTools9 DropletUtils9 kraken29 BCFtools8 HISAT28 NanoPlot8 seqtk8 STAR8 Trimmomatic8 BLAST7 Flye7 MACS7 taxonomy_krona_chart7 FeatureCounts6 Open Babel6 RSeQC6 StringTie6 Trim Galore6 Unipept6 UniProt6 COMBAT-TB Workbench5 DESeq25 Galactic Circos5 GEMINI5 gffcompare5 gffread5 Merqury5 Prokka5 Salmon5 Unicycler5 annotatemyids4 Biopython4 Bwa-mem24 bx-python4 epiScanpy4 Galaxy Image Analysis4 GenomeScope 2.04 KrakenTools4 MEGAHIT4 metaQuantome4 MSstatsTMT4 MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC4 pyGenomeTracks4 snippy4 SRA Software Toolkit4 Stacks4 anndata3 bed to protein map3 Bracken3 Cardinal3 Clustal 2 (Clustal W, Clustal X)3 customProDB3 GOseq3 Gromacs3 HUMAnN23 InterProScan (EBI)3 MetaPhlAn3 MSstats3 Newick Utilities3 Racon3 scikit-image3 tb-profiler3 Bakta2 Bio3D2 CellProfiler2 ChEMBL2 chemfp2 compute_sequence_length2 cshl_fastx_reverse_complement2 Diamond2 diaPASEF2 eggNOG-mapper v22 FastTree2 FlashLFQ2 funannotate2 gfastats2 GOEnrichment2 humann2 limma2 lofreq2 MAFFT2 MAKER2 MDAnalysis2 Medaka2 MetaNovo2 metaspades2 mzToSQLite2 NGSUtils2 The Protein Data Bank (PDB)2 pilon2 purge_dups2 QIIME2 R2 RAxML2 RDKit2 Recentrifuge2 RepeatMasker2 SALSA2 SeqCode2 snpEff2 staramr2 tbl2gff32 UMI-tools2 Vcflib2 WoLF PSORT2 Workflow4Metabolomics2 xcms2 ABRicate1 AmberTools1 antiSMASH1 Apollo1 AUGUSTUS1 BioRuby1 blockbuster1 Bowtie1 ChemicalToolbox1 ChIPpeakAnno1 ChiRA1 Circos1 Clair31 clusterProfiler1 dada21 EGA1 EGSEA1 European Nucleotide Archive (ENA)1 ewastools1 export2graphlan1 FASTX-Toolkit1 FEELnc1 fgsea1 Filtlong1 FREEC1 GAEVAL1 Galaxy1 GATK1 GECKO1 g:Profiler1 GraPhlAn1 Heinz1 Helixer1 HiCExplorer1 The Immune Epitope Database (IEDB)1 Integron Finder1 iqtree1 ISEScan1 IsoformSwitchAnalyzeR1 IWTomics1 Krona1 LASTZ1 lotus21 MAGeCK1 MALDIquant1 Matchms1 MEME1 MethylDackel1 miniasm1 miRDeep21 NCBI Resources1 Nextflow1 OBITools1 OMArk1 OptiType1 pangolin1 pathview1 Peakachu1 PfamScan1 phyloseq1 PlasFlow1 PlasmidFinder1 Polypolish1 Prodigal1 Proteinortho1 PYLFIRE1 pymethylprocess1 QualiMap1 RaceID1 RAMClustR1 RapidNJ1 RCAS1 RED1 RIAssigner1 rnaQUAST1 scater1 Seq2HLA1 shovill1 Smudgeplots1 SNAP1 SortMeRNA1 SPAdes1 SuCOS1 Targetfinder.org1 TransDecoder1 TRANSIT1 Trinity1 Trinotate1 VarScan1 VelvetOptimiser1 More...

Galaxy387 COMPSs22 Common Workflow Language12 Nextflow9 Snakemake5 Jupyter1 My type1 Taverna1 More...

Galaxy315 GTN315 Proteomics49 Transcriptomics34 assembly22 ecology18 genome-annotation16 microbiome15 statistics14 variant-analysis14 name:transcriptomics13 name:singlecell12 single-cell12 name:training11 computational-chemistry10 epigenetics10 Name:clinicalmp10 covid-199 evolution9 introduction9 LG-WF9 ml9 galaxy-interface8 Name:neoantigen7 cancer6 covid19.galaxyproject.org6 imaging6 Name:microgalaxy6 UX6 climate5 Metabolomics5 metagenomics5 Name:collection5 Name:iwc5 Name:pathogfair5 pediatric5 sequence-analysis5 visualisation5 earth-system4 HiFi4 name:BY-COVID4 name:scRNA-seq4 name:single-cell4 Ocean4 SARS-CoV-24 synthetic-biology4 Cheminformatics3 fastq3 genome_assembly3 genome-assembly3 hifiasm3 name:trajectory_analysis3 Pangeo3 rna-seq3 test3 10x2 ARTIC2 cat2 CellProfiler2 classification2 contributing2 cosifer2 GC-MS2 Marineomics2 microgalaxy2 name:data-management2 nf-core2 vgp2 alignment1 arabidopsis1 asaim1 ATACseq1 big-data1 Chowell_train_test1 clustering1 community-detection1 copernicus1 deeplearning1 emergen_validated1 example1 Exposomics1 Expospomics1 fnn1 Fungi1 Genomics1 geosciences1 hCNV1 hla1 Iedb1 Imagerecognition1 introductions1 Isoseq1 iwc1 iwtomics1 Llr6_model1 Logistic_regression_model1 Loris1 Lotus21 Ludwig1 MaxQuant1 Metaplasmidome1 MIRACUM1 mirna1 Mito-flash1 Mitochondrion_tracking1 Mnist1 moleculardynamics1 name:circos1 name:deconvolution1 Name:erga1 name:GTN1 Name:nanopore1 name:single_cell1 name:viz1 networks1 NormalyzerDE1 ONT1 PacBio1 Pathogen1 PubMed1 PubTator1 purge_dups1 Qcxms1 Referencegenome1 regression1 reverse1 Reviewed1 rna1 samtools1 Scatac-seq1 SDRF1 sempi31 text-mining1 Tuberculosis1 Vgp_curated1 More...

Helena Rasche359 Raül Sirvent20 Finn Bacall12 Simone Leo10 Jane Doe10 Laura Rodriguez-Navas9 Stian Soiland-Reyes7 Douglas Lowe6 Stuart Owen3 Johan Gustafsson3 Robin Long2 Hervé Ménager1 Alban Gaignard1 Luca Pireddu1 JEAN-MARIE BUREL1 Kim Philipp Jablonski1 Alexandra Has1 Paolo Uva1 Nandan Deshpande1 Terry Bertozzi1 Eli Chadwick1 yi.sun@embl.de1 More...

Galaxy Training Network359 Testing56 LifeMonitorDev9 iPC: individualizedPaediatricCure5 Australian BioCommons Dev5 test3 My team3 UX study leave2 UX study koehorst2 V-pipe1 Team11 ux study team1 UXStudy1 Testing_proteomics1 IGG-Bioinfo1 Eli's test team1 EMBL Bioimage analysis service1 More...

General452

Raül Sirvent9 Genís Bayarri6 Alexandra Has6 Laura Rodriguez-Navas5 José Mª Fernández2 Alban Gaignard1 Mar Batlle1 Jasper Koehorst1 Georgie Samaha1 Nandan Deshpande1 Terry Bertozzi1 yi.sun@embl.de1 More...

INB collection2 nf-core2 Test Collection1 IDR1

Bioimaging1 Marine biology1 Metagenomics1 Sequence assembly1

Genome assembly2 Phylogenetic footprinting1 Sequence clustering1

Stable22 Work-in-progress12

Not available8 Passing3 All failing1