Workflows

FastQC45 MultiQC29 SAMtools24 SCANPY22 Cutadapt17 QUAST16 ggplot215 Bowtie 214 BWA14 BEDTools13 BUSCO13 fastp13 scikit-learn13 Bandage12 JBrowse12 FreeBayes11 Minimap211 mothur11 MaxQuant10 msConvert10 BamTools9 DeepTools9 DropletUtils9 HISAT29 kraken29 BCFtools8 NanoPlot8 seqtk8 STAR8 Trimmomatic8 BLAST7 Flye7 MACS7 StringTie7 taxonomy_krona_chart7 Biopython6 FeatureCounts6 gffcompare6 Open Babel6 RSeQC6 Trim Galore6 Unipept6 UniProt6 COMBAT-TB Workbench5 DESeq25 Galactic Circos5 GEMINI5 gffread5 Merqury5 Prokka5 Salmon5 Unicycler5 annotatemyids4 bed to protein map4 Bwa-mem24 bx-python4 customProDB4 epiScanpy4 GenomeScope 2.04 KrakenTools4 MEGAHIT4 metaQuantome4 MSstatsTMT4 pyGenomeTracks4 snippy4 SRA Software Toolkit4 Stacks4 anndata3 Bracken3 Cardinal3 Clustal 2 (Clustal W, Clustal X)3 Galaxy Image Analysis3 GOseq3 Gromacs3 HUMAnN23 InterProScan (EBI)3 MetaPhlAn3 MSstats3 MuSiC Deconvolution3 Newick Utilities3 MuSiC suite: PoPMuSiC, HoTMuSiC, and SNPMuSiC3 Racon3 tb-profiler3 UMI-tools3 Bakta2 Bio3D2 CellProfiler2 ChEMBL2 chemfp2 compute_sequence_length2 cshl_fastx_reverse_complement2 Diamond2 diaPASEF2 eggNOG-mapper v22 FastTree2 FlashLFQ2 funannotate2 gfastats2 GOEnrichment2 humann2 limma2 lofreq2 MAFFT2 MAKER2 MDAnalysis2 Medaka2 MetaNovo2 metaspades2 mzToSQLite2 NGSUtils2 The Protein Data Bank (PDB)2 pilon2 purge_dups2 QIIME2 R2 RAxML2 RDKit2 Recentrifuge2 RepeatMasker2 SALSA2 scikit-image2 SeqCode2 Seurat2 snpEff2 staramr2 tbl2gff32 Vcflib2 WoLF PSORT2 Workflow4Metabolomics2 xcms2 ABRicate1 AmberTools1 antiSMASH1 Apollo1 AUGUSTUS1 blockbuster1 Bowtie1 ChemicalToolbox1 ChIPpeakAnno1 ChiRA1 Circos1 Clair31 clusterProfiler1 dada21 edgeR1 EGA1 EGSEA1 European Nucleotide Archive (ENA)1 ewastools1 export2graphlan1 Falco1 FASTX-Toolkit1 FEELnc1 fgsea1 Filtlong1 FREEC1 GAEVAL1 GECKO1 g:Profiler1 GraPhlAn1 Heinz1 Helixer1 HiCExplorer1 The Immune Epitope Database (IEDB)1 Integron Finder1 iqtree1 ISEScan1 IsoformSwitchAnalyzeR1 IWTomics1 Krona1 LASTZ1 lotus21 MAGeCK1 MALDIquant1 Matchms1 MEME1 MethylDackel1 miniasm1 miRDeep21 NCBI Resources1 OBITools1 OMArk1 OptiType1 pangolin1 pathview1 Peakachu1 PfamScan1 phyloseq1 PlasFlow1 PlasmidFinder1 Polypolish1 Prodigal1 Proteinortho1 QualiMap1 RaceID1 RAMClustR1 RapidNJ1 RCAS1 RED1 RIAssigner1 rnaQUAST1 scater1 Seq2HLA1 shovill1 Smudgeplots1 SNAP1 SortMeRNA1 SPAdes1 SuCOS1 Targetfinder.org1 TransDecoder1 TRANSIT1 Trinity1 Trinotate1 VarScan1 VelvetOptimiser1 More...

Galaxy369

Galaxy325 GTN325 Proteomics49 Transcriptomics35 assembly18 ecology18 genome-annotation16 microbiome15 name:singlecell14 single-cell14 statistics14 variant-analysis14 name:transcriptomics13 name:training11 computational-chemistry10 epigenetics10 Name:clinicalmp10 evolution9 introduction9 LG-WF9 ml9 galaxy-interface8 Name:neoantigen8 imaging6 Name:microgalaxy6 climate5 Metabolomics5 Name:collection5 Name:iwc5 Name:pathogfair5 name:single-cell5 sequence-analysis5 earth-system4 name:BY-COVID4 Name:deconv-eval4 name:scRNA-seq4 Ocean4 visualisation4 Cheminformatics3 metagenomics3 name:trajectory_analysis3 Pangeo3 synthetic-biology3 10x2 CellProfiler2 classification2 contributing2 GC-MS2 Marineomics2 microgalaxy2 name:data-management2 Name:seurat2 vgp2 arabidopsis1 asaim1 big-data1 cancer1 Chowell_train_test1 clustering1 copernicus1 deeplearning1 Exposomics1 Expospomics1 fnn1 Fungi1 Genomics1 geosciences1 hCNV1 hla1 Iedb1 Imagerecognition1 introductions1 iwtomics1 Llr6_model1 Logistic_regression_model1 Loris1 Lotus21 Ludwig1 Metaplasmidome1 MIRACUM1 mirna1 Mito-flash1 Mitochondrion_tracking1 Mnist1 moleculardynamics1 name:circos1 name:deconvolution1 Name:erga1 name:GTN1 Name:nanopore1 name:single_cell1 name:viz1 Pathogen1 Pseudobulk1 PubMed1 PubTator1 Qcxms1 Referencegenome1 regression1 Reviewed1 rna1 Scatac-seq1 sempi31 text-mining1 Tuberculosis1 Vgp_curated1 More...

Helena Rasche369

Galaxy Training Network369

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