Galaxy Introduction Peaks2Genes - Part 1
1.0

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Workflow Type: Galaxy

Galaxy Introduction Peaks2Genes - Part 1

Associated Tutorial

This workflows is part of the tutorial Galaxy Introduction Peaks2Genes - Part 1, available in the GTN

Features

Includes Galaxy Workflow Tests

Thanks to...

Tutorial Author(s): Anne Pajon, Clemens Blank, Bérénice Batut, Björn Grüning, Nicola Soranzo, Dilmurat Yusuf, Sarah Peter, Helena Rasche

SEEK ID: https://dev.workflowhub.eu/workflows/1102?version=1

Inputs

ID	Name	Description	Type
Genes	Genes	n/a	File
Peaks	Peaks	n/a	File

Steps

ID	Name	Description
2	Select last	toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/1.1.0
3	Replace Text	toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/1.1.3
4	Get flanks	toolshed.g2.bx.psu.edu/repos/devteam/get_flanks/get_flanks1/1.0.0
5	Replace Text	toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/1.1.3
6	Replace Text	toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/1.1.3
7	Convert Genomic Intervals To BED	CONVERTER_interval_to_bed_0
8	Intersect	toolshed.g2.bx.psu.edu/repos/devteam/intersect/gops_intersect_1/1.0.0
9	Group	Grouping1

Outputs

ID	Name	Description	Type
chr_count	chr_count	n/a	File

Version History

1.0 (earliest) Created 25th Jun 2024 at 10:57 by Helena Rasche

Added/updated 4 files

Open master 6e121b4

Creators and Submitter

Creators

Not specified

Submitter

Helena Rasche

Discussion Channel

GTN Matrix

Tool

bx-python

License

Creative Commons Attribution 4.0 International

Activity

Views: 311 Downloads: 81

Created: 25th Jun 2024 at 10:57

Last updated: 25th Jun 2024 at 10:57

Galaxy Introduction Peaks2Genes - Part 1 1.0