Find exons with the highest number of features
5.0 (latest)

5.0 (latest)

8.0 (earliest)

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Workflow Type: Galaxy

Galaxy 101

Associated Tutorial

This workflows is part of the tutorial Find exons with the highest number of features, available in the GTN

Features

Includes Galaxy Workflow Tests

Thanks to...

Tutorial Author(s): Saskia Hiltemann, Nicola Soranzo, Clemens Blank, Anton Nekrutenko, Björn Grüning, Anne Pajon, Helena Rasche

Workflow Author(s): Anton Nekrutenko, Helena Rasche

SEEK ID: https://dev.workflowhub.eu/workflows/1106?version=2

Inputs

ID	Name	Description	Type
Exons	Exons	Input exons file	File
Features	Features	Input features file	File

Steps

ID	Name	Description
2	bedtools Intersect intervals	toolshed.g2.bx.psu.edu/repos/iuc/bedtools/bedtools_intersectbed/2.30.0+galaxy1
3	Datamash	toolshed.g2.bx.psu.edu/repos/iuc/datamash_ops/datamash_ops/1.1.0
4	Sort	toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_sort_header_tool/1.1.1
5	Select first	toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_head_tool/1.1.0
6	Compare two Datasets	comp1

Outputs

ID	Name	Description	Type
top_5_exons	top_5_exons	n/a	File

Version History

5.0 (latest) Created 16th Jul 2024 at 14:06 by Helena Rasche

Added/updated 4 files

Open master 891021a

8.0 (earliest) Created 25th Jun 2024 at 10:58 by Helena Rasche

Added/updated 4 files

Frozen 8.0 a477442

Creators and Submitter

Creators

Not specified

Submitter

Helena Rasche

Discussion Channel

GTN Matrix

Tool

BEDTools

License

Creative Commons Attribution 4.0 International

Activity

Views: 483 Downloads: 144

Created: 25th Jun 2024 at 10:58

Last updated: 25th Jun 2024 at 10:58

Find exons with the highest number of features 5.0 (latest) 5.0 (latest) 8.0 (earliest)