Workflow Type: Galaxy
Open
Antibiotic resistance detection
Associated Tutorial
This workflows is part of the tutorial Copy Of GTN Training - Antibiotic Resistance Detection, available in the GTN
Thanks to...
Tutorial Author(s): Willem de Koning, Saskia Hiltemann
Inputs
ID | Name | Description | Type |
---|---|---|---|
Plasmids | Plasmids | n/a |
|
Steps
ID | Name | Description |
---|---|---|
1 | NanoPlot | toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.25.0+galaxy1 |
10 | NanoPlot | toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.25.0+galaxy1 |
11 | Map with minimap2 | toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17 |
12 | Racon | toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.3.1.1 |
2 | Map with minimap2 | toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17 |
3 | Create assemblies with Unicycler | toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.7.0 |
4 | miniasm | toolshed.g2.bx.psu.edu/repos/iuc/miniasm/miniasm/0.2+galaxy0 |
5 | Bandage Image | toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy0 |
6 | PlasFlow | toolshed.g2.bx.psu.edu/repos/iuc/plasflow/PlasFlow/1.0 |
7 | staramr | toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.5.1 |
8 | Bandage Image | toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy0 |
9 | GFA to FASTA | toolshed.g2.bx.psu.edu/repos/iuc/gfa_to_fa/gfa_to_fa/0.1.0 |
Version History
1.0 (earliest) Created 25th Jun 2024 at 10:58 by Helena Rasche
Added/updated 4 files
Open
master
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![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
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Views: 138 Downloads: 43
Created: 25th Jun 2024 at 10:58
Last updated: 25th Jun 2024 at 10:58
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
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