Copy Of GTN Training - Antibiotic Resistance Detection 1.0
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Download RO-Crate
Run on GalaxyAntibiotic resistance detection
Associated Tutorial
This workflows is part of the tutorial Copy Of GTN Training - Antibiotic Resistance Detection, available in the GTN
Thanks to...
Tutorial Author(s): Willem de Koning, Saskia Hiltemann
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Plasmids | Plasmids | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 1 | NanoPlot | toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.25.0+galaxy1 |
| 10 | NanoPlot | toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.25.0+galaxy1 |
| 11 | Map with minimap2 | toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17 |
| 12 | Racon | toolshed.g2.bx.psu.edu/repos/bgruening/racon/racon/1.3.1.1 |
| 2 | Map with minimap2 | toolshed.g2.bx.psu.edu/repos/iuc/minimap2/minimap2/2.17 |
| 3 | Create assemblies with Unicycler | toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.7.0 |
| 4 | miniasm | toolshed.g2.bx.psu.edu/repos/iuc/miniasm/miniasm/0.2+galaxy0 |
| 5 | Bandage Image | toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy0 |
| 6 | PlasFlow | toolshed.g2.bx.psu.edu/repos/iuc/plasflow/PlasFlow/1.0 |
| 7 | staramr | toolshed.g2.bx.psu.edu/repos/nml/staramr/staramr_search/0.5.1 |
| 8 | Bandage Image | toolshed.g2.bx.psu.edu/repos/iuc/bandage/bandage_image/0.8.1+galaxy0 |
| 9 | GFA to FASTA | toolshed.g2.bx.psu.edu/repos/iuc/gfa_to_fa/gfa_to_fa/0.1.0 |
Version History
1.0 (earliest) Created 25th Jun 2024 at 10:58 by Helena Rasche
Added/updated 4 files
Open
mastere940ca4
Creators and Submitter
Views: 1008 Downloads: 293 Runs: 0
Created: 25th Jun 2024 at 10:58
Last updated: 25th Jun 2024 at 10:58
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