Workflow 2: Data Cleaning And Chimera Removal [Galaxy Training: 16S Microbial Analysis With Mothur] 1.0
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Download RO-Crate16S Microbial Analysis with mothur (short)
Associated Tutorial
This workflows is part of the tutorial Workflow 2: Data Cleaning And Chimera Removal [Galaxy Training: 16S Microbial Analysis With Mothur], available in the GTN
Thanks to...
Tutorial Author(s): Saskia Hiltemann, Bérénice Batut, Dave Clements
Workflow Author(s): Saskia Hiltemann
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Aligned Sequences | #main/Aligned Sequences | n/a |
|
| Count Table | #main/Count Table | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 2 | Summary.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_summary_seqs/mothur_summary_seqs/1.39.5.0 |
| 3 | Screen.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_screen_seqs/mothur_screen_seqs/1.39.5.1 |
| 4 | Filter.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_filter_seqs/mothur_filter_seqs/1.39.5.0 |
| 5 | Unique.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_unique_seqs/mothur_unique_seqs/1.39.5.0 |
| 6 | Pre.cluster | toolshed.g2.bx.psu.edu/repos/iuc/mothur_pre_cluster/mothur_pre_cluster/1.39.5.0 |
| 7 | Summary.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_summary_seqs/mothur_summary_seqs/1.39.5.0 |
| 8 | Chimera.vsearch | toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_vsearch/mothur_chimera_vsearch/1.39.5.1 |
| 9 | Remove.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_remove_seqs/mothur_remove_seqs/1.39.5.0 |
| 10 | Summary.seqs | toolshed.g2.bx.psu.edu/repos/iuc/mothur_summary_seqs/mothur_summary_seqs/1.39.5.0 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| Summary.seqs on input dataset(s): summary | #main/Summary.seqs on input dataset(s): summary | n/a |
|
| _anonymous_output_1 | #main/_anonymous_output_1 | n/a |
|
| _anonymous_output_10 | #main/_anonymous_output_10 | n/a |
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| _anonymous_output_11 | #main/_anonymous_output_11 | n/a |
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| _anonymous_output_12 | #main/_anonymous_output_12 | n/a |
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| _anonymous_output_13 | #main/_anonymous_output_13 | n/a |
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| _anonymous_output_14 | #main/_anonymous_output_14 | n/a |
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| _anonymous_output_15 | #main/_anonymous_output_15 | n/a |
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| _anonymous_output_2 | #main/_anonymous_output_2 | n/a |
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| _anonymous_output_3 | #main/_anonymous_output_3 | n/a |
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| _anonymous_output_4 | #main/_anonymous_output_4 | n/a |
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| _anonymous_output_5 | #main/_anonymous_output_5 | n/a |
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| _anonymous_output_6 | #main/_anonymous_output_6 | n/a |
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| _anonymous_output_7 | #main/_anonymous_output_7 | n/a |
|
| _anonymous_output_8 | #main/_anonymous_output_8 | n/a |
|
| _anonymous_output_9 | #main/_anonymous_output_9 | n/a |
|
Version History
1.0 (earliest) Created 25th Jun 2024 at 10:58 by Helena Rasche
Added/updated 4 files
Open
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Creators and Submitter
Views: 394 Downloads: 112
Created: 25th Jun 2024 at 10:58
Last updated: 25th Jun 2024 at 10:58
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