Genome Assembly using PacBio data
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4.0 (earliest)

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Workflow Type: Galaxy

Genome Assembly using PacBio data and Flye assembler

Associated Tutorial

This workflows is part of the tutorial Genome Assembly using PacBio data, available in the GTN

Tutorial Author(s): Anthony Bretaudeau, Alexandre Cormier, Erwan Corre, Laura Leroi, Stéphanie Robin, Gallantries: Bridging Training Communities in Life Science, Environment and Health

Workflow Author(s): Erwan Corre, Stéphanie Robin, Anthony Bretaudeau, Alexandre Cormier

SEEK ID: https://dev.workflowhub.eu/workflows/1131?version=1

ID	Name	Description	Type
PacBio reads	#main/PacBio reads	PacBio reads in fastq format	File
Reference genome	#main/Reference genome	Reference genome from JGI	File

ID	Name	Description
2	Flye	toolshed.g2.bx.psu.edu/repos/bgruening/flye/flye/2.9+galaxy0
3	Fasta Statistics	toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/2.0
4	Busco	toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.2.2+galaxy2
5	Fasta Statistics	toolshed.g2.bx.psu.edu/repos/iuc/fasta_stats/fasta-stats/2.0
6	Quast	toolshed.g2.bx.psu.edu/repos/iuc/quast/quast/5.0.2+galaxy3
7	Busco	toolshed.g2.bx.psu.edu/repos/iuc/busco/busco/5.2.2+galaxy2

ID	Name	Description	Type
Flye on input dataset(s): assembly graph	#main/Flye on input dataset(s): assembly graph	n/a	File
Flye on input dataset(s): assembly info	#main/Flye on input dataset(s): assembly info	n/a	File
Flye on input dataset(s): consensus	#main/Flye on input dataset(s): consensus	n/a	File
Flye on input dataset(s): graphical fragment assembly	#main/Flye on input dataset(s): graphical fragment assembly	n/a	File
Quast on input dataset(s): HTML report	#main/Quast on input dataset(s): HTML report	n/a	File
_anonymous_output_1	#main/_anonymous_output_1	n/a	File
_anonymous_output_2	#main/_anonymous_output_2	n/a	File