Bacterial Genome Annotation
2.0 (latest)

2.0 (latest)

1.0 (earliest)

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Workflow Type: Galaxy

Bacterial Genome Annotation

Associated Tutorial

This workflows is part of the tutorial Bacterial Genome Annotation, available in the GTN

Workflow Author(s): Bérénice Batut, Pierre Marin

Tutorial Author(s): Bérénice Batut

Funder(s): ABRomics

SEEK ID: https://dev.workflowhub.eu/workflows/1136?version=2

ID	Name	Description	Type
contigs	contigs	contigs	File

ID	Name	Description
1	ISEScan	toolshed.g2.bx.psu.edu/repos/iuc/isescan/isescan/1.7.2.3+galaxy1
2	PlasmidFinder	toolshed.g2.bx.psu.edu/repos/iuc/plasmidfinder/plasmidfinder/2.1.6+galaxy1
3	Integron Finder	toolshed.g2.bx.psu.edu/repos/iuc/integron_finder/integron_finder/2.0.5+galaxy0
4	Bakta	toolshed.g2.bx.psu.edu/repos/iuc/bakta/bakta/1.9.3+galaxy0
5	Group	Grouping1
6	Group	Grouping1
7	Replace Text	toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_column/9.3+galaxy1
8	Select last	toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_tail_tool/9.3+galaxy1
9	Table to GFF3	toolshed.g2.bx.psu.edu/repos/iuc/tbl2gff3/tbl2gff3/1.2
10	JBrowse	toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.11+galaxy1

ID	Name	Description	Type
isescan_results	isescan_results	n/a	File
plasmidfinder_results	plasmidfinder_results	n/a	File
integronfinder_summary	integronfinder_summary	n/a	File
bakta_summary	bakta_summary	n/a	File