Pathway Analysis
2.0 (earliest)

1.0 (latest)

2.0 (earliest)

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Workflow Type: Galaxy

Evaluating and ranking a set of pathways based on multiple metrics

Associated Tutorial

This workflows is part of the tutorial Pathway Analysis, available in the GTN

Thanks to...

Tutorial Author(s): Kenza Bazi-Kabbaj, Thomas Duigou, Joan Hérisson, Guillaume Gricourt, Ioana Popescu, Jean-Loup Faulon

SEEK ID: https://dev.workflowhub.eu/workflows/1137?version=1

Inputs

ID	Name	Description	Type
Biomass reaction ID	#main/Biomass reaction ID	n/a	string
Cell compartment ID	#main/Cell compartment ID	n/a	string
Chassis where to produce target from	#main/Chassis where to produce target from	n/a	File
Heterologous pathways	#main/Heterologous pathways	n/a	array containing File

Steps

ID	Name	Description
4	Flux balance analysis	toolshed.g2.bx.psu.edu/repos/iuc/rpfba/rpfba/5.12.1
5	Thermo	toolshed.g2.bx.psu.edu/repos/tduigou/rpthermo/rpthermo/5.12.1
6	Score Pathway	toolshed.g2.bx.psu.edu/repos/tduigou/rpscore/rpscore/5.12.1
7	Rank Pathways	toolshed.g2.bx.psu.edu/repos/tduigou/rpranker/rpranker/5.12.1

Outputs

ID	Name	Description	Type
Ranked Pathways	#main/Ranked Pathways	n/a	File
_anonymous_output_1	#main/_anonymous_output_1	n/a	File
_anonymous_output_2	#main/_anonymous_output_2	n/a	File
_anonymous_output_3	#main/_anonymous_output_3	n/a	File

Version History

1.0 (latest) Created 16th Jul 2024 at 14:06 by Helena Rasche

Added/updated 4 files

Open master 51e3d8a

2.0 (earliest) Created 25th Jun 2024 at 11:02 by Helena Rasche

Added/updated 4 files

Frozen 2.0 edd1626

Creators and Submitter

Creators

Not specified

Submitter

Helena Rasche

Discussion Channel

GTN Matrix

License

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Activity

Views: 1410 Downloads: 564 Runs: 1

Created: 25th Jun 2024 at 11:02

Last updated: 25th Jun 2024 at 11:02

Pathway Analysis 2.0 (earliest) 1.0 (latest) 2.0 (earliest)