Trim and filter reads - fastp - upgraded
2.0 (latest)

2.0 (latest)

4.0 (earliest)

Visit source

Download RO-Crate

Workflow Type: Galaxy

Associated Tutorial

This workflows is part of the tutorial Trim and filter reads - fastp - upgraded , available in the GTN

Features

Includes a Galaxy Workflow Report

Thanks to...

Tutorial Author(s): Anna Syme

Workflow Author(s): Anna Syme

SEEK ID: https://dev.workflowhub.eu/workflows/1144?version=2

Inputs

ID	Name	Description	Type
Illumina reads R1	#main/Illumina reads R1	n/a	File
Illumina reads R2	#main/Illumina reads R2	n/a	File
long reads	#main/long reads	n/a	File

Steps

ID	Name	Description
3	fastp on short reads	toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.4+galaxy0
4	fastp on long reads	toolshed.g2.bx.psu.edu/repos/iuc/fastp/fastp/0.23.4+galaxy0

Outputs

ID	Name	Description	Type
fastp filtered R1 reads	#main/fastp filtered R1 reads	n/a	File
fastp filtered R2 reads	#main/fastp filtered R2 reads	n/a	File
fastp filtered long reads	#main/fastp filtered long reads	n/a	File
fastp report on long reads html	#main/fastp report on long reads html	n/a	File
fastp report on long reads json	#main/fastp report on long reads json	n/a	File
fastp report on short reads html	#main/fastp report on short reads html	n/a	File
fastp report on short reads json	#main/fastp report on short reads json	n/a	File

Version History

2.0 (latest) Created 16th Jul 2024 at 14:08 by Helena Rasche

Added/updated 4 files

Open master 07e1071

4.0 (earliest) Created 25th Jun 2024 at 11:03 by Helena Rasche

Added/updated 4 files

Frozen 4.0 9b9525a

Creators and Submitter

Creators

Not specified

Submitter

Helena Rasche

Discussion Channel

GTN Matrix

Tool

fastp

License

GNU General Public License v3.0 or later

Activity

Views: 458 Downloads: 138

Created: 25th Jun 2024 at 11:03

Last updated: 25th Jun 2024 at 11:03

Trim and filter reads - fastp - upgraded 2.0 (latest) 2.0 (latest) 4.0 (earliest)