Genetic Design (BASIC Assembly)
Visit source
Download RO-Crate
Run on GalaxyDesign plasmids encoding predicted pathways by using the BASIC assembly method.
Associated Tutorial
This workflows is part of the tutorial Genetic Design (BASIC Assembly), available in the GTN
Thanks to...
Tutorial Author(s): Kenza Bazi-Kabbaj, Thomas Duigou, Joan Hérisson, Guillaume Gricourt, Ioana Popescu, Jean-Loup Faulon
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| DNA-Bot settings | #main/DNA-Bot settings | n/a |
|
| Enzyme taxon IDs | #main/Enzyme taxon IDs | Comma separated values |
|
| Host taxon ID | #main/Host taxon ID | n/a |
|
| Linkers and user parts | #main/Linkers and user parts | n/a |
|
| Pathway (SBML) | #main/Pathway (SBML) | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 5 | Selenzyme | Performs enzyme selection from a reaction query. toolshed.g2.bx.psu.edu/repos/tduigou/selenzy/selenzy-wrapper/0.2.0 |
| 6 | BasicDesign | Extracts enzyme IDs from rpSBML files. toolshed.g2.bx.psu.edu/repos/tduigou/rpbasicdesign/rpbasicdesign/0.3.4 |
| 7 | DNA-Bot | DNA assembly using BASIC on OpenTrons. toolshed.g2.bx.psu.edu/repos/tduigou/dnabot/dnabot/3.1.0 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| Uniprot IDs | #main/Uniprot IDs | n/a |
|
| _anonymous_output_1 | #main/_anonymous_output_1 | n/a |
|
| _anonymous_output_2 | #main/_anonymous_output_2 | n/a |
|
| _anonymous_output_3 | #main/_anonymous_output_3 | n/a |
|
| _anonymous_output_4 | #main/_anonymous_output_4 | n/a |
|
| _anonymous_output_5 | #main/_anonymous_output_5 | n/a |
|
| _anonymous_output_6 | #main/_anonymous_output_6 | n/a |
|
Version History
1.0 (latest) Created 16th Jul 2024 at 14:06 by Helena Rasche
Added/updated 4 files
Open
masterb26f00e
3.0 (earliest) Created 25th Jun 2024 at 11:03 by Helena Rasche
Added/updated 4 files
Frozen
3.0549296f
Creators and Submitter
Views: 1386 Downloads: 548 Runs: 0
Created: 25th Jun 2024 at 11:03
Last updated: 25th Jun 2024 at 11:03
Tags AttributionsNone
Related items
https://orcid.org/0000-0001-9760-8992
Teams: Testing, Finn's test team, PNDB, LifeMonitorDev, iPC: individualizedPaediatricCure, test, Test Team, Australian BioCommons Dev, opscientia, V-pipe, UX study leave, DALiuGE workflows, Team1, UX study, My Fancy Team, Team UX Study11, My team, ux study team, UX study koehorst, Team Koehorst, UX Study (satra), Steve's UX Study Test Team, TestSaandra, KJ-workflow-test, NewTeam, team, UXStudy, A Team, UX study K, UXStudy99, Study team, Another new team, UX study2, Team 20220225, my new team, UX Study AU, Testing_proteomics, A test space (KKH), Pleiade, QSM4SENIOR, IGG-Bioinfo, Defragmentation training school, FWCC-D@HZDR, Submission Tutorial, Testing team, Galaxy Training Network, Exploring SEEK SOP functionality, MyTest, Tsinghua University BCI group, Test Team Number Nine, Eli's test team, EMBL Bioimage analysis service, Hu's Test, test 705c32e038d0, Workshop Mar 2025 Test Out, Genomics for Australian Plants, Testing RO-crate generation and submission, BSC Dev, LS Test Team, CSB, MyTestTeam
Web page: Not specified
Space: General
Public web page: https://galaxy.training
