Genetic Design (BASIC Assembly)
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Workflow Type: Galaxy

Design plasmids encoding predicted pathways by using the BASIC assembly method.

Associated Tutorial

This workflows is part of the tutorial Genetic Design (BASIC Assembly), available in the GTN

Tutorial Author(s): Kenza Bazi-Kabbaj, Thomas Duigou, Joan Hérisson, Guillaume Gricourt, Ioana Popescu, Jean-Loup Faulon

SEEK ID: https://dev.workflowhub.eu/workflows/1147?version=2

ID	Name	Description	Type
DNA-Bot settings	#main/DNA-Bot settings	n/a	File
Enzyme taxon IDs	#main/Enzyme taxon IDs	Comma separated values	string
Host taxon ID	#main/Host taxon ID	n/a	int
Linkers and user parts	#main/Linkers and user parts	n/a	File
Pathway (SBML)	#main/Pathway (SBML)	n/a	File

ID	Name	Description
5	Selenzyme	Performs enzyme selection from a reaction query. toolshed.g2.bx.psu.edu/repos/tduigou/selenzy/selenzy-wrapper/0.2.0
6	BasicDesign	Extracts enzyme IDs from rpSBML files. toolshed.g2.bx.psu.edu/repos/tduigou/rpbasicdesign/rpbasicdesign/0.3.4
7	DNA-Bot	DNA assembly using BASIC on OpenTrons. toolshed.g2.bx.psu.edu/repos/tduigou/dnabot/dnabot/3.1.0

ID	Name	Description	Type
Uniprot IDs	#main/Uniprot IDs	n/a	File
_anonymous_output_1	#main/_anonymous_output_1	n/a	File
_anonymous_output_2	#main/_anonymous_output_2	n/a	File
_anonymous_output_3	#main/_anonymous_output_3	n/a	File
_anonymous_output_4	#main/_anonymous_output_4	n/a	File
_anonymous_output_5	#main/_anonymous_output_5	n/a	File
_anonymous_output_6	#main/_anonymous_output_6	n/a	File

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Created: 25th Jun 2024 at 11:03

Last updated: 25th Jun 2024 at 11:03