GECKO pairwise comparison
2.0 (earliest)

1.0 (latest)

2.0 (earliest)

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Workflow Type: Galaxy

A workflow designed to compare two sequences using GECKO, extract repeats and perform multiple sequence alignment

Associated Tutorial

This workflows is part of the tutorial GECKO pairwise comparison, available in the GTN

Tutorial Author(s): Esteban Perez-Wohlfeil

SEEK ID: https://dev.workflowhub.eu/workflows/1160?version=1

ID	Name	Description	Type
Query sequence	#main/Query sequence	n/a	File
Reference sequence	#main/Reference sequence	n/a	File

ID	Name	Description
2	Gecko	toolshed.g2.bx.psu.edu/repos/iuc/gecko/gecko/1.2
3	Text reformatting	toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_awk_tool/1.1.2
4	ClustalW	toolshed.g2.bx.psu.edu/repos/devteam/clustalw/clustalw/2.1

ID	Name	Description	Type
ClustalW on input dataset(s): clustal	#main/ClustalW on input dataset(s): clustal	n/a	File
ClustalW on input dataset(s): dnd	#main/ClustalW on input dataset(s): dnd	n/a	File
Gecko on input dataset(s): CSV	#main/Gecko on input dataset(s): CSV	n/a	File
_anonymous_output_3	#main/_anonymous_output_3	n/a	File
_anonymous_output_4	#main/_anonymous_output_4	n/a	File