Data QC - upgraded

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Workflow Type: Galaxy

Associated Tutorial

This workflows is part of the tutorial Data QC - upgraded, available in the GTN

Features

Thanks to...

Tutorial Author(s): Anna Syme

Workflow Author(s): Anna Syme

gtn star logo followed by the word workflows

SEEK ID: https://dev.workflowhub.eu/workflows/1162?version=1

Inputs

ID Name Description Type
Input file: Illumina reads R1 Input file: Illumina reads R1 n/a
  • File
Input file: Illumina reads R2 Input file: Illumina reads R2 n/a
  • File
Input file: long reads Input file: long reads n/a
  • File

Steps

ID Name Description
3 Nanoplot: long reads toolshed.g2.bx.psu.edu/repos/iuc/nanoplot/nanoplot/1.42.0+galaxy1
4 FastQC on R1 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy0
5 FastQC on R2 toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy0
6 MultiQC: combine fastQC reports toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.11+galaxy1

Outputs

ID Name Description Type
NanoPlot on input dataset(s): HTML report NanoPlot on input dataset(s): HTML report n/a
  • File
MultiQC on input dataset(s): Webpage MultiQC on input dataset(s): Webpage n/a
  • File

Version History

2.0 (latest) Created 16th Jul 2024 at 14:08 by Helena Rasche

Added/updated 4 files


Open master eea6480

4.0 (earliest) Created 25th Jun 2024 at 11:05 by Helena Rasche

Added/updated 4 files


Frozen 4.0 cade850
help Creators and Submitter
Creators
Not specified
Submitter
Discussion Channel
GTN Matrix
Tools
NanoPlot
FastQC
MultiQC
License
GNU General Public License v3.0 or later
Activity

Views: 473   Downloads: 161

Created: 25th Jun 2024 at 11:04

Last updated: 25th Jun 2024 at 11:05

help Attributions

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Total size: 53.6 KB
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