DIA_Analysis

DIA Analysis Training using HEK Ecoli data in OSW

Associated Tutorial

This workflows is part of the tutorial DIA_Analysis_OSW, available in the GTN

Tutorial Author(s): Matthias Fahrner, Melanie Föll

Inputs

ID	Name	Description	Type
"Input Dataset Collection"	#main/"Input Dataset Collection"	n/a	array containing File
Input exp. design annotation	#main/Input exp. design annotation	n/a	File
Spectral library	#main/Spectral library	n/a	File
iRTassays.tsv	#main/iRTassays.tsv	n/a	File

Steps

ID	Name	Description
4	msconvert	toolshed.g2.bx.psu.edu/repos/galaxyp/msconvert/msconvert/3.0.19052.1
5	OpenSwathWorkflow	toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathworkflow/OpenSwathWorkflow/2.5+galaxy0
6	PyProphet merge	toolshed.g2.bx.psu.edu/repos/galaxyp/pyprophet_merge/pyprophet_merge/2.1.4.0
7	PyProphet score	toolshed.g2.bx.psu.edu/repos/galaxyp/pyprophet_score/pyprophet_score/2.1.4.2
8	PyProphet peptide	toolshed.g2.bx.psu.edu/repos/galaxyp/pyprophet_peptide/pyprophet_peptide/2.1.4.0
9	PyProphet peptide	toolshed.g2.bx.psu.edu/repos/galaxyp/pyprophet_peptide/pyprophet_peptide/2.1.4.0
10	PyProphet protein	toolshed.g2.bx.psu.edu/repos/galaxyp/pyprophet_protein/pyprophet_protein/2.1.4.0
11	PyProphet protein	toolshed.g2.bx.psu.edu/repos/galaxyp/pyprophet_protein/pyprophet_protein/2.1.4.0
12	PyProphet export	toolshed.g2.bx.psu.edu/repos/galaxyp/pyprophet_export/pyprophet_export/2.1.4.1
13	Ecoli protein expression matrix	Grep1

Outputs

ID	Name	Description	Type
_anonymous_output_10	#main/_anonymous_output_10	n/a	File
_anonymous_output_11	#main/_anonymous_output_11	n/a	File
_anonymous_output_12	#main/_anonymous_output_12	n/a	File
_anonymous_output_13	#main/_anonymous_output_13	n/a	File
_anonymous_output_14	#main/_anonymous_output_14	n/a	File
_anonymous_output_15	#main/_anonymous_output_15	n/a	File
_anonymous_output_16	#main/_anonymous_output_16	n/a	File
_anonymous_output_17	#main/_anonymous_output_17	n/a	File
_anonymous_output_18	#main/_anonymous_output_18	n/a	File
_anonymous_output_19	#main/_anonymous_output_19	n/a	File
_anonymous_output_20	#main/_anonymous_output_20	n/a	File
_anonymous_output_21	#main/_anonymous_output_21	n/a	File
_anonymous_output_22	#main/_anonymous_output_22	n/a	File
_anonymous_output_23	#main/_anonymous_output_23	n/a	File
_anonymous_output_24	#main/_anonymous_output_24	n/a	File
_anonymous_output_5	#main/_anonymous_output_5	n/a	File
_anonymous_output_6	#main/_anonymous_output_6	n/a	File
_anonymous_output_7	#main/_anonymous_output_7	n/a	File
_anonymous_output_8	#main/_anonymous_output_8	n/a	File
_anonymous_output_9	#main/_anonymous_output_9	n/a	File

Version History

Added/updated 4 files

Open master 0a4fb3f

Added/updated 4 files

Frozen 2.0 1035c58