Workflow Type: Galaxy

DIA Analysis Training using HEK Ecoli data in OSW

Associated Tutorial

This workflows is part of the tutorial DIA_Analysis_OSW, available in the GTN

Thanks to...

Tutorial Author(s): Matthias Fahrner, Melanie Föll

gtn star logo followed by the word workflows

Inputs

ID Name Description Type
"Input Dataset Collection" #main/"Input Dataset Collection" n/a
  • array containing
    • File
Input exp. design annotation #main/Input exp. design annotation n/a
  • File
Spectral library #main/Spectral library n/a
  • File
iRTassays.tsv #main/iRTassays.tsv n/a
  • File

Steps

ID Name Description
4 msconvert toolshed.g2.bx.psu.edu/repos/galaxyp/msconvert/msconvert/3.0.19052.1
5 OpenSwathWorkflow toolshed.g2.bx.psu.edu/repos/galaxyp/openms_openswathworkflow/OpenSwathWorkflow/2.5+galaxy0
6 PyProphet merge toolshed.g2.bx.psu.edu/repos/galaxyp/pyprophet_merge/pyprophet_merge/2.1.4.0
7 PyProphet score toolshed.g2.bx.psu.edu/repos/galaxyp/pyprophet_score/pyprophet_score/2.1.4.2
8 PyProphet peptide toolshed.g2.bx.psu.edu/repos/galaxyp/pyprophet_peptide/pyprophet_peptide/2.1.4.0
9 PyProphet peptide toolshed.g2.bx.psu.edu/repos/galaxyp/pyprophet_peptide/pyprophet_peptide/2.1.4.0
10 PyProphet protein toolshed.g2.bx.psu.edu/repos/galaxyp/pyprophet_protein/pyprophet_protein/2.1.4.0
11 PyProphet protein toolshed.g2.bx.psu.edu/repos/galaxyp/pyprophet_protein/pyprophet_protein/2.1.4.0
12 PyProphet export toolshed.g2.bx.psu.edu/repos/galaxyp/pyprophet_export/pyprophet_export/2.1.4.1
13 Ecoli protein expression matrix Grep1

Outputs

ID Name Description Type
_anonymous_output_10 #main/_anonymous_output_10 n/a
  • File
_anonymous_output_11 #main/_anonymous_output_11 n/a
  • File
_anonymous_output_12 #main/_anonymous_output_12 n/a
  • File
_anonymous_output_13 #main/_anonymous_output_13 n/a
  • File
_anonymous_output_14 #main/_anonymous_output_14 n/a
  • File
_anonymous_output_15 #main/_anonymous_output_15 n/a
  • File
_anonymous_output_16 #main/_anonymous_output_16 n/a
  • File
_anonymous_output_17 #main/_anonymous_output_17 n/a
  • File
_anonymous_output_18 #main/_anonymous_output_18 n/a
  • File
_anonymous_output_19 #main/_anonymous_output_19 n/a
  • File
_anonymous_output_20 #main/_anonymous_output_20 n/a
  • File
_anonymous_output_21 #main/_anonymous_output_21 n/a
  • File
_anonymous_output_22 #main/_anonymous_output_22 n/a
  • File
_anonymous_output_23 #main/_anonymous_output_23 n/a
  • File
_anonymous_output_24 #main/_anonymous_output_24 n/a
  • File
_anonymous_output_5 #main/_anonymous_output_5 n/a
  • File
_anonymous_output_6 #main/_anonymous_output_6 n/a
  • File
_anonymous_output_7 #main/_anonymous_output_7 n/a
  • File
_anonymous_output_8 #main/_anonymous_output_8 n/a
  • File
_anonymous_output_9 #main/_anonymous_output_9 n/a
  • File

Version History

1.0 (latest) Created 16th Jul 2024 at 14:08 by Helena Rasche

Added/updated 4 files


Open master 0a4fb3f

2.0 (earliest) Created 25th Jun 2024 at 11:06 by Helena Rasche

Added/updated 4 files


Frozen 2.0 1035c58
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Views: 542   Downloads: 160

Created: 25th Jun 2024 at 11:06

Last updated: 25th Jun 2024 at 11:06

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