RepeatMasker
1.0

Workflow Type: Galaxy

Masking repeats in a genome using RepeatMasker

Associated Tutorial

This workflows is part of the tutorial RepeatMasker, available in the GTN

Features

Thanks to...

Tutorial Author(s): Anthony Bretaudeau, Alexandre Cormier, Laura Leroi, Erwan Corre, Stéphanie Robin, Jonathan Kreplak

Workflow Author(s): Anthony Bretaudeau

Funder(s): Gallantries: Bridging Training Communities in Life Science, Environment and Health, EuroScienceGateway

gtn star logo followed by the word workflows

Inputs

ID Name Description Type
Raw genome sequence #main/Raw genome sequence The raw (not masked) genome sequence in fasta format
  • File

Steps

ID Name Description
1 Red toolshed.g2.bx.psu.edu/repos/iuc/red/red/2018.09.10+galaxy1
2 RepeatMasker toolshed.g2.bx.psu.edu/repos/bgruening/repeat_masker/repeatmasker_wrapper/4.1.5+galaxy0

Outputs

ID Name Description Type
RepeatMasker masked sequence on input dataset(s) #main/RepeatMasker masked sequence on input dataset(s) n/a
  • File
RepeatMasker output log on input dataset(s) #main/RepeatMasker output log on input dataset(s) n/a
  • File
RepeatMasker repeat catalogue on input dataset(s) #main/RepeatMasker repeat catalogue on input dataset(s) n/a
  • File
RepeatMasker repeat statistics on input dataset(s) #main/RepeatMasker repeat statistics on input dataset(s) n/a
  • File
_anonymous_output_1 #main/_anonymous_output_1 n/a
  • File
_anonymous_output_2 #main/_anonymous_output_2 n/a
  • File

Version History

1.0 (earliest) Created 25th Jun 2024 at 11:09 by Helena Rasche

Added/updated 4 files


Open master c7d8c42
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Views: 403   Downloads: 93

Created: 25th Jun 2024 at 11:09

Last updated: 25th Jun 2024 at 11:09

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