Workflow Type: Galaxy
Open
Masking repeats in a genome using RepeatMasker
Associated Tutorial
This workflows is part of the tutorial RepeatMasker, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): Anthony Bretaudeau, Alexandre Cormier, Laura Leroi, Erwan Corre, Stéphanie Robin, Jonathan Kreplak
Workflow Author(s): Anthony Bretaudeau
Funder(s): Gallantries: Bridging Training Communities in Life Science, Environment and Health, EuroScienceGateway
Inputs
ID | Name | Description | Type |
---|---|---|---|
Raw genome sequence | #main/Raw genome sequence | The raw (not masked) genome sequence in fasta format |
|
Steps
ID | Name | Description |
---|---|---|
1 | Red | toolshed.g2.bx.psu.edu/repos/iuc/red/red/2018.09.10+galaxy1 |
2 | RepeatMasker | toolshed.g2.bx.psu.edu/repos/bgruening/repeat_masker/repeatmasker_wrapper/4.1.5+galaxy0 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
RepeatMasker masked sequence on input dataset(s) | #main/RepeatMasker masked sequence on input dataset(s) | n/a |
|
RepeatMasker output log on input dataset(s) | #main/RepeatMasker output log on input dataset(s) | n/a |
|
RepeatMasker repeat catalogue on input dataset(s) | #main/RepeatMasker repeat catalogue on input dataset(s) | n/a |
|
RepeatMasker repeat statistics on input dataset(s) | #main/RepeatMasker repeat statistics on input dataset(s) | n/a |
|
_anonymous_output_1 | #main/_anonymous_output_1 | n/a |
|
_anonymous_output_2 | #main/_anonymous_output_2 | n/a |
|
Version History
1.0 (earliest) Created 25th Jun 2024 at 11:09 by Helena Rasche
Added/updated 4 files
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master
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Views: 403 Downloads: 93
Created: 25th Jun 2024 at 11:09
Last updated: 25th Jun 2024 at 11:09
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