MaxQuant MSstatsTMT Training

Visit source Download RO-Crate Run on Galaxy
Workflow Type: Galaxy

MaxQuant and MSstats for the analysis of TMT data

Associated Tutorial

This workflows is part of the tutorial MaxQuant MSstatsTMT Training, available in the GTN

Thanks to...

Tutorial Author(s): Klemens Fröhlich, Melanie Föll, Matthias Fahrner

gtn star logo followed by the word workflows

SEEK ID: https://dev.workflowhub.eu/workflows/1227?version=2

Inputs

ID Name Description Type
Experimental design template #main/Experimental design template n/a
  • File
Input Dataset Collection #main/Input Dataset Collection n/a
  • array containing
    • File
MSstats annotation file #main/MSstats annotation file n/a
  • File

Steps

ID Name Description
3 MaxQuant toolshed.g2.bx.psu.edu/repos/galaxyp/maxquant/maxquant/1.6.17.0+galaxy2
4 MSstatsTMT toolshed.g2.bx.psu.edu/repos/galaxyp/msstatstmt/msstatstmt/2.0.0+galaxy0

Outputs

ID Name Description Type
_anonymous_output_10 #main/_anonymous_output_10 n/a
  • File
_anonymous_output_11 #main/_anonymous_output_11 n/a
  • File
_anonymous_output_12 #main/_anonymous_output_12 n/a
  • File
_anonymous_output_4 #main/_anonymous_output_4 n/a
  • File
_anonymous_output_5 #main/_anonymous_output_5 n/a
  • File
_anonymous_output_6 #main/_anonymous_output_6 n/a
  • File
_anonymous_output_7 #main/_anonymous_output_7 n/a
  • File
_anonymous_output_8 #main/_anonymous_output_8 n/a
  • File
_anonymous_output_9 #main/_anonymous_output_9 n/a
  • File

Version History

1.0 (latest) Created 16th Jul 2024 at 14:08 by Helena Rasche

Added/updated 4 files


Open master 914eb12

2.0 (earliest) Created 25th Jun 2024 at 11:13 by Helena Rasche

Added/updated 4 files


Frozen 2.0 490f7d5
help Creators and Submitter
Creators
Not specified
Submitter
Discussion Channel
GTN Matrix
Tools
MaxQuant
MSstats
License
Creative Commons Attribution 4.0 International (CC-BY-4.0)
Activity

Views: 1401   Downloads: 514   Runs: 0

Created: 25th Jun 2024 at 11:13

Last updated: 25th Jun 2024 at 11:13

help Attributions

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Total size: 49.6 KB
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