'Biomarkers4Paris' Workflow
3.0

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Workflow Type: Galaxy

Biomarker candidate identification

Associated Tutorial

This workflows is part of the tutorial 'Biomarkers4Paris' Workflow, available in the GTN

Thanks to...

Tutorial Author(s): Florence Combes, David Christiany, Valentin Loux, Yves Vandenbrouck

SEEK ID: https://dev.workflowhub.eu/workflows/1232?version=1

Steps

ID	Name	Description
0	Build tissue-specific expression dataset	toolshed.g2.bx.psu.edu/repos/proteore/proteore_tissue_specific_expression_data/retrieve_from_hpa/2019.02.27
1	Build tissue-specific expression dataset	toolshed.g2.bx.psu.edu/repos/proteore/proteore_tissue_specific_expression_data/retrieve_from_hpa/2019.02.27
2	Filter by keywords and/or numerical value	toolshed.g2.bx.psu.edu/repos/proteore/proteore_filter_keywords_values/MQoutputfilter/2019.03.05
3	Venn diagram	toolshed.g2.bx.psu.edu/repos/proteore/proteore_venn_diagram/Jvenn/2018.12.18
4	Cut	toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/1.0.0
5	Filter by keywords and/or numerical value	toolshed.g2.bx.psu.edu/repos/proteore/proteore_filter_keywords_values/MQoutputfilter/2019.03.05
6	Add expression data	toolshed.g2.bx.psu.edu/repos/proteore/proteore_expression_rnaseq_abbased/rna_abbased_data/2019.03.07
7	Filter by keywords and/or numerical value	toolshed.g2.bx.psu.edu/repos/proteore/proteore_filter_keywords_values/MQoutputfilter/2019.03.05
8	ID Converter	toolshed.g2.bx.psu.edu/repos/proteore/proteore_id_converter/IDconverter/2019.01.28
9	Add protein features	toolshed.g2.bx.psu.edu/repos/proteore/proteore_prot_features/prot_features/2019.01.18
10	Filter by keywords and/or numerical value	toolshed.g2.bx.psu.edu/repos/proteore/proteore_filter_keywords_values/MQoutputfilter/2019.03.05
11	Get MS/MS observations in tissue/fluid	toolshed.g2.bx.psu.edu/repos/proteore/proteore_ms_observation_pepatlas/retr_pepatlas1/2019.02.01.1
12	Filter by keywords and/or numerical value	toolshed.g2.bx.psu.edu/repos/proteore/proteore_filter_keywords_values/MQoutputfilter/2019.03.05

Version History

3.0 (earliest) Created 25th Jun 2024 at 11:13 by Helena Rasche

Added/updated 4 files

Open master de313a0

Creators and Submitter

Creators

Not specified

Submitter

Helena Rasche

Discussion Channel

GTN Matrix

License

Creative Commons Attribution 4.0 International

Activity

Views: 141 Downloads: 52

Created: 25th Jun 2024 at 11:13

Last updated: 25th Jun 2024 at 11:13

'Biomarkers4Paris' Workflow 3.0