MuSiC: Deconvolution
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Download RO-Crate
Run on GalaxyWorkflow for the first half of the "Bulk RNA Deconvolution with MuSiC" tutorial.
Associated Tutorial
This workflows is part of the tutorial Bulk RNA Deconvolution with MuSiC, available in the GTN
Features
- Includes Galaxy Workflow Tests
- Includes a Galaxy Workflow Report
- Uses Galaxy Workflow Comments
Thanks to...
Workflow Author(s): Morgan Howells
Tutorial Author(s): Mehmet Tekman, Wendi Bacon
Tutorial Contributor(s): Morgan Howells, Helena Rasche, Mehmet Tekman, Saskia Hiltemann, Wendi Bacon, Björn Grüning
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Bulk RNA Assay Tabular | Bulk RNA Assay Tabular | n/a |
|
| Bulk RNA Phenotype Tabular | Bulk RNA Phenotype Tabular | n/a |
|
| Cell Types List | Cell Types List | n/a |
|
| scRNA Assay Tabular | scRNA Assay Tabular | n/a |
|
| scRNA Phenotype Tabular | scRNA Phenotype Tabular | n/a |
|
Steps
| ID | Name | Description |
|---|---|---|
| 5 | Construct Expression Set Object | toolshed.g2.bx.psu.edu/repos/bgruening/music_construct_eset/music_construct_eset/0.1.1+galaxy4 |
| 6 | Construct Expression Set Object | toolshed.g2.bx.psu.edu/repos/bgruening/music_construct_eset/music_construct_eset/0.1.1+galaxy4 |
| 7 | Extract Cell Types | toolshed.g2.bx.psu.edu/repos/bgruening/music_inspect_eset/music_inspect_eset/0.1.1+galaxy4 |
| 8 | Extract General Info (scrna) | toolshed.g2.bx.psu.edu/repos/bgruening/music_inspect_eset/music_inspect_eset/0.1.1+galaxy4 |
| 9 | Extract General Info (Bulk) | toolshed.g2.bx.psu.edu/repos/bgruening/music_inspect_eset/music_inspect_eset/0.1.1+galaxy4 |
| 10 | Music: Estimate Cell Proportions | toolshed.g2.bx.psu.edu/repos/bgruening/music_deconvolution/music_deconvolution/0.1.1+galaxy4 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| _anonymous_output_1 | _anonymous_output_1 | n/a |
|
| _anonymous_output_2 | _anonymous_output_2 | n/a |
|
| _anonymous_output_3 | _anonymous_output_3 | n/a |
|
Version History
3.0 (latest) Created 17th Feb 2025 at 13:07 by Helena Rasche
Added/updated 4 files
Open
mastereb47170
2.0 (earliest) Created 25th Jun 2024 at 11:13 by Helena Rasche
Added/updated 4 files
Frozen
2.0cfe5912
Creators and Submitter
Views: 1260 Downloads: 466 Runs: 0
Created: 25th Jun 2024 at 11:13
Last updated: 17th Feb 2025 at 13:07
AttributionsNone
Related items
https://orcid.org/0000-0001-9760-8992
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