Workflow Type: Galaxy
Open
Single-cell quality control with scater
Associated Tutorial
This workflows is part of the tutorial Scater, available in the GTN
Thanks to...
Tutorial Author(s): Graham Etherington, Nicola Soranzo
Inputs
ID | Name | Description | Type |
---|---|---|---|
annotation.txt | annotation.txt | n/a |
|
counts.txt | counts.txt | n/a |
|
mt_controls.txt | mt_controls.txt | n/a |
|
Steps
ID | Name | Description |
---|---|---|
3 | Scater: Calculate QC metrics | toolshed.g2.bx.psu.edu/repos/iuc/scater_create_qcmetric_ready_sce/scater_create_qcmetric_ready_sce/1.12.2 |
4 | Scater: plot library QC | toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_dist_scatter/scater_plot_dist_scatter/1.12.2 |
5 | Scater: filter SCE | toolshed.g2.bx.psu.edu/repos/iuc/scater_filter/scater_filter/1.12.2 |
6 | Scater: plot library QC | toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_dist_scatter/scater_plot_dist_scatter/1.12.2 |
7 | Scater: PCA plot | toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_pca/scater_plot_pca/1.12.2 |
Version History
1.0 (earliest) Created 25th Jun 2024 at 11:14 by Helena Rasche
Added/updated 4 files
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Views: 138 Downloads: 45
Created: 25th Jun 2024 at 11:14
Last updated: 25th Jun 2024 at 11:14
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
![help](/assets/famfamfam_silk/information-8cfe563be76fb11b27c8ba778f5d40ce6800b244d6ca58ef6e9973308efbe534.png)
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