Scater
1.0

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Workflow Type: Galaxy

Single-cell quality control with scater

Associated Tutorial

This workflows is part of the tutorial Scater, available in the GTN

Thanks to...

Tutorial Author(s): Graham Etherington, Nicola Soranzo

gtn star logo followed by the word workflows

SEEK ID: https://dev.workflowhub.eu/workflows/1241?version=1

Inputs

ID Name Description Type
annotation.txt annotation.txt n/a
  • File
counts.txt counts.txt n/a
  • File
mt_controls.txt mt_controls.txt n/a
  • File

Steps

ID Name Description
3 Scater: Calculate QC metrics toolshed.g2.bx.psu.edu/repos/iuc/scater_create_qcmetric_ready_sce/scater_create_qcmetric_ready_sce/1.12.2
4 Scater: plot library QC toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_dist_scatter/scater_plot_dist_scatter/1.12.2
5 Scater: filter SCE toolshed.g2.bx.psu.edu/repos/iuc/scater_filter/scater_filter/1.12.2
6 Scater: plot library QC toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_dist_scatter/scater_plot_dist_scatter/1.12.2
7 Scater: PCA plot toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_pca/scater_plot_pca/1.12.2

Version History

1.0 (earliest) Created 25th Jun 2024 at 11:14 by Helena Rasche

Added/updated 4 files


Open master 12fa947
help Creators and Submitter
Creators
Not specified
Submitter
Discussion Channel
GTN Matrix
Tool
scater
License
Creative Commons Attribution 4.0 International
Activity

Views: 406   Downloads: 88

Created: 25th Jun 2024 at 11:14

Last updated: 25th Jun 2024 at 11:14

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Total size: 45.5 KB
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