Single-cell QC with scater
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2.0 (latest)

1.0 (earliest)

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Workflow Type: Galaxy

Single-cell quality control with scater

Associated Tutorial

This workflows is part of the tutorial Scater, available in the GTN

Tutorial Author(s): Graham Etherington, Nicola Soranzo

SEEK ID: https://dev.workflowhub.eu/workflows/1241?version=1

ID	Name	Description	Type
annotation.txt	annotation.txt	n/a	File
counts.txt	counts.txt	n/a	File
mt_controls.txt	mt_controls.txt	n/a	File

ID	Name	Description
3	Scater: Calculate QC metrics	toolshed.g2.bx.psu.edu/repos/iuc/scater_create_qcmetric_ready_sce/scater_create_qcmetric_ready_sce/1.12.2
4	Scater: plot library QC	toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_dist_scatter/scater_plot_dist_scatter/1.12.2
5	Scater: filter SCE	toolshed.g2.bx.psu.edu/repos/iuc/scater_filter/scater_filter/1.12.2
6	Scater: plot library QC	toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_dist_scatter/scater_plot_dist_scatter/1.12.2
7	Scater: PCA plot	toolshed.g2.bx.psu.edu/repos/iuc/scater_plot_pca/scater_plot_pca/1.12.2

Added/updated 4 files

Open master b4b22cf

Added/updated 4 files

Frozen 1.0 12fa947

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Created: 25th Jun 2024 at 11:14

Last updated: 20th Jan 2025 at 13:06