Workflow constructed from Tutorial 'Introduction to Image Analysis using Galaxy'
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This workflows is part of the tutorial Introduction to Image Analysis using Galaxy, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): Till Korten, Leonid Kostrykin
Tutorial Author(s): Thomas Wollmann, Saskia Hiltemann, Leonid Kostrykin
Funder(s): ELIXIR Europe
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| input_image | #main/input_image | The image to be segmented |
|
Steps
| ID | Name | Description |
|---|---|---|
| 1 | Show image info | toolshed.g2.bx.psu.edu/repos/imgteam/image_info/ip_imageinfo/5.7.1+galaxy1 |
| 2 | Filter 2-D image | toolshed.g2.bx.psu.edu/repos/imgteam/2d_simple_filter/ip_filter_standard/1.12.0+galaxy1 |
| 3 | Perform histogram equalization | toolshed.g2.bx.psu.edu/repos/imgteam/2d_histogram_equalization/ip_histogram_equalization/0.18.1+galaxy0 |
| 4 | Threshold image | toolshed.g2.bx.psu.edu/repos/imgteam/2d_auto_threshold/ip_threshold/0.18.1+galaxy3 |
| 5 | Convert binary image to label map | toolshed.g2.bx.psu.edu/repos/imgteam/binary2labelimage/ip_binary_to_labelimage/0.5+galaxy0 |
| 6 | Overlay images | toolshed.g2.bx.psu.edu/repos/imgteam/overlay_images/ip_overlay_images/0.0.4+galaxy4 |
| 7 | Count objects in label map | toolshed.g2.bx.psu.edu/repos/imgteam/count_objects/ip_count_objects/0.0.5-2 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| out_png | #main/out_png | n/a |
|
| output | #main/output | n/a |
|
Version History
6.0 (latest) Created 11th Nov 2024 at 13:06 by Helena Rasche
Added/updated 4 files
Open
masterd97f709
8.0 (earliest) Created 25th Jun 2024 at 11:16 by Helena Rasche
Added/updated 4 files
Frozen
8.03f681ea
Creators and Submitter
Views: 428 Downloads: 163
Created: 25th Jun 2024 at 11:16
Last updated: 11th Nov 2024 at 13:06
AttributionsNone
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