GTN - Sequence Analyses - Mapping - Jbrowse (imported from uploaded file)
5.0

Workflow Type: Galaxy

Mapping

Associated Tutorial

This workflows is part of the tutorial GTN - Sequence Analyses - Mapping - Jbrowse (imported from uploaded file), available in the GTN

Thanks to...

Tutorial Author(s): Joachim Wolff, Bérénice Batut, Helena Rasche

gtn star logo followed by the word workflows

Inputs

ID Name Description Type
reads_1 #main/reads_1 n/a
  • File
reads_2 #main/reads_2 n/a
  • File

Steps

ID Name Description
2 FastQC toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1
3 FastQC toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1
4 Trim Galore! toolshed.g2.bx.psu.edu/repos/bgruening/trim_galore/trim_galore/0.4.3.1
5 MultiQC toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.9+galaxy1
6 Bowtie2 toolshed.g2.bx.psu.edu/repos/devteam/bowtie2/bowtie2/2.4.2+galaxy0
7 Samtools stats toolshed.g2.bx.psu.edu/repos/devteam/samtools_stats/samtools_stats/2.0.2+galaxy2
8 JBrowse toolshed.g2.bx.psu.edu/repos/iuc/jbrowse/jbrowse/1.16.1+galaxy0

Outputs

ID Name Description Type
_anonymous_output_1 #main/_anonymous_output_1 n/a
  • File
_anonymous_output_2 #main/_anonymous_output_2 n/a
  • File
bam_stats_1 #main/bam_stats_1 n/a
  • File
bowtie2_mapping_stats #main/bowtie2_mapping_stats n/a
  • File

Version History

5.0 (earliest) Created 25th Jun 2024 at 11:18 by Helena Rasche

Added/updated 4 files


Open master 512dbfd
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Views: 402   Downloads: 98

Created: 25th Jun 2024 at 11:17

Last updated: 25th Jun 2024 at 11:18

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