Workflow Type: Galaxy
Open
Frozen
Quality Control
Associated Tutorial
This workflows is part of the tutorial GTN - Sequence Analyses - Quality Control (imported from uploaded file), available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Tutorial Author(s): Bérénice Batut, Maria Doyle, Alexandre Cormier, Anthony Bretaudeau, Laura Leroi, Erwan Corre, Stéphanie Robin, Gallantries: Bridging Training Communities in Life Science, Environment and Health, Cameron Hyde
Inputs
ID | Name | Description | Type |
---|---|---|---|
reads_1 | #main/reads_1 | n/a |
|
reads_2 | #main/reads_2 | n/a |
|
Steps
ID | Name | Description |
---|---|---|
2 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 |
3 | Cutadapt | toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.3 |
4 | FastQC | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1 |
5 | Cutadapt | toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.3 |
6 | MultiQC | toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.9+galaxy1 |
Outputs
ID | Name | Description | Type |
---|---|---|---|
_anonymous_output_1 | #main/_anonymous_output_1 | n/a |
|
_anonymous_output_2 | #main/_anonymous_output_2 | n/a |
|
multiqc | #main/multiqc | n/a |
|
reads_1_cutadapt | #main/reads_1_cutadapt | n/a |
|
reads_1_fastqc | #main/reads_1_fastqc | n/a |
|
reads_2_fastqc | #main/reads_2_fastqc | n/a |
|
reads_cutadapt | #main/reads_cutadapt | n/a |
|
Version History
5.0 (latest) Created 16th Jul 2024 at 14:24 by Helena Rasche
Added/updated 4 files
Open
master
292a93f
6.0 (earliest) Created 25th Jun 2024 at 11:19 by Helena Rasche
Added/updated 4 files
Frozen
6.0
cbd0285
Creators and Submitter
Creators
Not specifiedSubmitter
Discussion Channel
Activity
Views: 415 Downloads: 137
Created: 25th Jun 2024 at 11:19
Last updated: 25th Jun 2024 at 11:19
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