GTN - Sequence Analyses - Quality Control (imported from uploaded file)

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Workflow Type: Galaxy

Quality Control

Associated Tutorial

This workflows is part of the tutorial GTN - Sequence Analyses - Quality Control (imported from uploaded file), available in the GTN

Features

Thanks to...

Tutorial Author(s): Bérénice Batut, Maria Doyle, Alexandre Cormier, Anthony Bretaudeau, Laura Leroi, Erwan Corre, Stéphanie Robin, Gallantries: Bridging Training Communities in Life Science, Environment and Health, Cameron Hyde

gtn star logo followed by the word workflows

SEEK ID: https://dev.workflowhub.eu/workflows/1282?version=1

Inputs

ID Name Description Type
reads_1 #main/reads_1 n/a
  • File
reads_2 #main/reads_2 n/a
  • File

Steps

ID Name Description
2 FastQC toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1
3 Cutadapt toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.3
4 FastQC toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.72+galaxy1
5 Cutadapt toolshed.g2.bx.psu.edu/repos/lparsons/cutadapt/cutadapt/1.16.3
6 MultiQC toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.9+galaxy1

Outputs

ID Name Description Type
_anonymous_output_1 #main/_anonymous_output_1 n/a
  • File
_anonymous_output_2 #main/_anonymous_output_2 n/a
  • File
multiqc #main/multiqc n/a
  • File
reads_1_cutadapt #main/reads_1_cutadapt n/a
  • File
reads_1_fastqc #main/reads_1_fastqc n/a
  • File
reads_2_fastqc #main/reads_2_fastqc n/a
  • File
reads_cutadapt #main/reads_cutadapt n/a
  • File

Version History

5.0 (latest) Created 16th Jul 2024 at 14:24 by Helena Rasche

Added/updated 4 files


Open master 292a93f

6.0 (earliest) Created 25th Jun 2024 at 11:19 by Helena Rasche

Added/updated 4 files


Frozen 6.0 cbd0285
help Creators and Submitter
Creators
Not specified
Submitter
Discussion Channel
GTN Matrix
Tools
FastQC
Cutadapt
MultiQC
License
Creative Commons Attribution 4.0 International
Activity

Views: 416   Downloads: 137

Created: 25th Jun 2024 at 11:19

Last updated: 25th Jun 2024 at 11:19

help Attributions

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Total size: 56.4 KB
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