Simtext training workflow
1.0

Workflow Type: Galaxy

In this workflow the similarity among set of search queries (e.g. genes) is analyzed based on the associated vocabulary in PubMed. The last tool is an interactive tool that enables the inspection of the data.

Associated Tutorial

This workflows is part of the tutorial Simtext training workflow, available in the GTN

Thanks to...

Tutorial Author(s): Marie Gramm, Dennis Lal group, Daniel Blankenberg

Workflow Author(s):

SEEK ID: https://dev.workflowhub.eu/workflows/1310?version=1

Steps

ID	Name	Description
1	PubMed query	toolshed.g2.bx.psu.edu/repos/iuc/pubmed_by_queries/pubmed_by_queries/0.0.2
2	PMIDs to PubTator	toolshed.g2.bx.psu.edu/repos/iuc/pmids_to_pubtator_matrix/pmids_to_pubtator_matrix/0.0.2
3	simtext_app	interactive_tool_simtext_app

Version History

1.0 (earliest) Created 25th Jun 2024 at 11:22 by Helena Rasche

Added/updated 4 files

Open master e6b921d

Creators and Submitter

Creators

Not specified

Submitter

Helena Rasche

Discussion Channel

GTN Matrix

License

Creative Commons Attribution 4.0 International (CC-BY-4.0)

Activity

Views: 1052 Downloads: 282 Runs: 0

Created: 25th Jun 2024 at 11:22

Simtext training workflow 1.0