RNA Seq Counts To Genes
3.0

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Workflow Type: Galaxy

RNA-seq counts to genes

Associated Tutorial

This workflows is part of the tutorial RNA Seq Counts To Genes, available in the GTN

Thanks to...

Tutorial Author(s): Maria Doyle, Belinda Phipson, Jovana Maksimovic, Anna Trigos, Matt Ritchie, Harriet Dashnow, Shian Su, Charity Law

gtn star logo followed by the word workflows

SEEK ID: https://dev.workflowhub.eu/workflows/1321?version=1

Inputs

ID Name Description Type
sampleinfo sampleinfo n/a
  • File
seqdata seqdata n/a
  • File

Steps

ID Name Description
2 Cut toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/1.1.0
3 Merge Columns toolshed.g2.bx.psu.edu/repos/devteam/merge_cols/mergeCols1/1.0.1
4 Replace Text toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_replace_in_line/1.1.1
5 Cut toolshed.g2.bx.psu.edu/repos/bgruening/text_processing/tp_cut_tool/1.1.0
6 annotateMyIDs toolshed.g2.bx.psu.edu/repos/iuc/annotatemyids/annotatemyids/3.5.0.1
7 limma toolshed.g2.bx.psu.edu/repos/iuc/limma_voom/limma_voom/3.34.9.9

Version History

3.0 (earliest) Created 25th Jun 2024 at 11:24 by Helena Rasche

Added/updated 4 files


Open master e0cd0b4
help Creators and Submitter
Creators
Not specified
Submitter
Discussion Channel
GTN Matrix
Tools
annotatemyids
limma
License
Creative Commons Attribution 4.0 International
Activity

Views: 385   Downloads: 80

Created: 25th Jun 2024 at 11:24

Last updated: 25th Jun 2024 at 11:24

help Attributions

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Total size: 49 KB
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