Mitogenome-Assembly-VGP0 1.0
Visit source
Download RO-CrateAssociated Tutorial
This workflows is part of the tutorial Assembly of the mitochondrial genome from PacBio HiFi reads, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): VGP, Galaxy
Tutorial Author(s): Delphine Lariviere
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Collection of Pacbio Data | Collection of Pacbio Data | n/a |
|
| Email adress | Email adress | Required for NCBI database query |
|
| Species name (latin name) | Species name (latin name) | Latin name of species |
|
Steps
| ID | Name | Description |
|---|---|---|
| 3 | MitoHiFi | toolshed.g2.bx.psu.edu/repos/bgruening/mitohifi/mitohifi/3+galaxy0 |
| 4 | MitoHiFi | toolshed.g2.bx.psu.edu/repos/bgruening/mitohifi/mitohifi/3+galaxy0 |
| 5 | Compress file(s) | toolshed.g2.bx.psu.edu/repos/iuc/compress_file/compress_file/0.1.0 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| contigs_stats | contigs_stats | n/a |
|
| mitogenome_coverage | mitogenome_coverage | n/a |
|
| mitogenome_annotation | mitogenome_annotation | n/a |
|
| mitogenome_genbank | mitogenome_genbank | n/a |
|
| output_file | output_file | n/a |
|
Version History
1.0 (earliest) Created 9th Sep 2024 at 14:23 by Helena Rasche
Added/updated 4 files
Open
mastere0ddd60
Creators and Submitter
Views: 286 Downloads: 90
Created: 9th Sep 2024 at 14:23
Last updated: 9th Sep 2024 at 14:23
AttributionsNone
Related items
https://orcid.org/0000-0001-9760-8992
Teams: Testing, Finn's test team, PNDB, LifeMonitorDev, iPC: individualizedPaediatricCure, test, Test Team, Australian BioCommons Dev, opscientia, V-pipe, UX study leave, DALiuGE workflows, Team1, UX study, My Fancy Team, Team UX Study11, My team, ux study team, UX study koehorst, Team Koehorst, UX Study (satra), Steve's UX Study Test Team, TestSaandra, KJ-workflow-test, NewTeam, team, UXStudy, A Team, UX study K, UXStudy99, Study team, Another new team, UX study2, Team 20220225, my new team, UX Study AU, Testing_proteomics, A test space (KKH), Pleiade, QSM4SENIOR, IGG-Bioinfo, Defragmentation training school, FWCC-D@HZDR, Submission Tutorial, Testing team, Galaxy Training Network, Exploring SEEK SOP functionality, MyTest, Tsinghua University BCI group, Test Team Number Nine, Eli's test team, EMBL Bioimage analysis service, Hu's Test
Web page: Not specified
Space: General
Public web page: https://galaxy.training
