Mitogenome-Assembly-VGP0 1.0
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Download RO-CrateAssociated Tutorial
This workflows is part of the tutorial Assembly of the mitochondrial genome from PacBio HiFi reads, available in the GTN
Features
- Includes Galaxy Workflow Tests
Thanks to...
Workflow Author(s): VGP, Galaxy
Tutorial Author(s): Delphine Lariviere
Inputs
| ID | Name | Description | Type |
|---|---|---|---|
| Collection of Pacbio Data | Collection of Pacbio Data | n/a |
|
| Email adress | Email adress | Required for NCBI database query |
|
| Species name (latin name) | Species name (latin name) | Latin name of species |
|
Steps
| ID | Name | Description |
|---|---|---|
| 3 | MitoHiFi | toolshed.g2.bx.psu.edu/repos/bgruening/mitohifi/mitohifi/3+galaxy0 |
| 4 | MitoHiFi | toolshed.g2.bx.psu.edu/repos/bgruening/mitohifi/mitohifi/3+galaxy0 |
| 5 | Compress file(s) | toolshed.g2.bx.psu.edu/repos/iuc/compress_file/compress_file/0.1.0 |
Outputs
| ID | Name | Description | Type |
|---|---|---|---|
| contigs_stats | contigs_stats | n/a |
|
| mitogenome_coverage | mitogenome_coverage | n/a |
|
| mitogenome_annotation | mitogenome_annotation | n/a |
|
| mitogenome_genbank | mitogenome_genbank | n/a |
|
| output_file | output_file | n/a |
|
Version History
1.0 (earliest) Created 9th Sep 2024 at 14:23 by Helena Rasche
Added/updated 4 files
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mastere0ddd60
Creators and Submitter
Views: 186 Downloads: 64
Created: 9th Sep 2024 at 14:23
Last updated: 9th Sep 2024 at 14:23
AttributionsNone
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https://orcid.org/0000-0001-9760-8992
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