Workflow Type: Snakemake
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Demo de-novo assembly workflow
This workflow assembles short reads by running the obsolete Velvet assembler. It performs
the same assembly on every sample with different k-mer length settings, and reports the longest
contig in each case.
Click and drag the diagram to pan, double click or use the controls to zoom.
Version History
v1.1.0 (latest) Created 20th Mar 2025 at 12:38 by Tim Booth
Allow the adapter to be configured for Cutadapt
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v1.1.0
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main @ f41d268 (earliest) Created 19th Mar 2025 at 14:56 by Tim Booth
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BioFAIR
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Citation
Booth, T., & {BioFAIR}. {Demo assembly workflow}. https://tbooth.github.io/snakemake-publishing
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Views: 120 Downloads: 39
Created: 19th Mar 2025 at 14:55
Last updated: 20th Mar 2025 at 12:38

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